RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA540466" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA540466 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27299154 27299154 PRJNA540466_S_NODE_22663_length_373_cov_4.466667_g22114_i0 PRJNA540466 22663 373 4.466667 16.66066791 Plasmopara viticola lesion associated tobamo-like virus 1 2719536 Viruses Viruses 70.1 4.62e-11   NR QIP68002.1 2719536 g22114 i0 38.5 0.772117962466488 96 57 75.6 1 2 283 2198 2293 QIP68002.1 RNA-dependent RNA polymerase [Plasmopara viticola lesion associated tobamo-like virus 1] diamond 288 70.1 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Plasmopara viticola lesion associated tobamo-like virus 1
31911159 31911159 PRJNA540466_S_NODE_56017_length_252_cov_2.340782_g55468_i0 PRJNA540466 56017 252 2.340782 5.89877064 Mint vein banding-associated virus 265877 Viruses Viruses 62.8 3.69e-9   NR YP_009506335.1 265877 g55468 i0 57.1 0.583333333333333 49 21 58.3 0 2 148 1875 1923 YP_009506335.1 polyprotein [Mint vein banding-associated virus] diamond 147 62.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae Menthavirus Menthavirus menthae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;