RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA540466" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29983075 29983075 PRJNA540466_S_NODE_40891_length_287_cov_2.378505_g40342_i0 PRJNA540466 40891 287 2.378505 6.82630935 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 55.1 2.57e-6   NR RMH72984.1 2026742 g40342 i0 29.4 1.06620209059233 102 63 98.3 2 2 283 172 272 RMH72984.1 MAG: hypothetical protein D6675_03365 [Gemmatimonadota bacterium] diamond 306 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32480869 32480869 PRJNA540466_S_NODE_5239_length_665_cov_9.108108_g4821_i0 PRJNA540466 5239 665 9.108108 60.5689182 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 107 4.3499999999999997e-23   NR HEY8164680.1 2026741 g4821 i0 75.4 3.01353383458647 65 16 29.3 0 659 465 342 406 HEY8164680.1 dipeptidase [Gemmatimonadaceae bacterium] diamond 2004 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32716359 32716359 PRJNA540466_S_NODE_39900_length_290_cov_2.649770_g39351_i0 PRJNA540466 39900 290 2.64977 7.684333 FCB group 1783270 Bacteria Bacteria 82 9.19e-17   NR HEU4563628.1 2026741 g39351 i0 68.8 1.24137931034483 48 15 49.7 0 14 157 166 213 HEU4563628.1 multicopper oxidase domain-containing protein [Gemmatimonadaceae bacterium] diamond 360 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;