RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA540466" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30331095 30331095 PRJNA540466_S_NODE_48312_length_268_cov_1.328205_g47763_i0 PRJNA540466 48312 268 1.328205 3.5595894 Fodinibius salicampi 1920655 Bacteria Bacteria 46.2 0.00297   NR WP_265787698.1 1920655 g47763 i0 48.8 0.973880597014925 41 21 45.9 0 169 47 34 74 WP_265787698.1 D-arabinono-1,4-lactone oxidase [Fodinibius salicampi] diamond 261 46.2 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius salicampi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;