RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA533623" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533623 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26888147 26888147 PRJNA533623_P_NODE_42341_length_331_cov_18.240741_g40567_i0 PRJNA533623 42341 331 18.240741 60.37685271 Thermoproteota archaeon 2056631 Archaea Archaea 198 2.35e-61   NR MDP9305909.1 2056631 g40567 i0 92.9 0.88821752265861 98 7 88.8 0 22 315 29 126 MDP9305909.1 AmmeMemoRadiSam system protein B [Thermoproteota archaeon] diamond 294 198 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28025387 28025387 PRJNA533623_P_NODE_56465_length_267_cov_4.762136_g54685_i0 PRJNA533623 56465 267 4.762136 12.71490312 Thermofilaceae archaeon 2268203 Archaea Archaea 87 2.8e-19   NR MEM2592530.1 2268203 g54685 i0 100 0.471910112359551 42 0 47.2 0 21 146 125 166 MEM2592530.1 DUF2750 domain-containing protein [Thermofilaceae archaeon] diamond 126 87 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae   Thermofilaceae archaeon
29004563 29004563 PRJNA533623_P_NODE_38088_length_356_cov_13.484746_g36316_i0 PRJNA533623 38088 356 13.484746 48.00569576 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 105 1.0099999999999999e-23   NR MEM3365499.1 2282146 g36316 i0 77.9 0.573033707865168 68 15 57.3 0 233 30 203 270 MEM3365499.1 hypothetical protein [Candidatus Methanomethyliaceae archaeon] diamond 204 105 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
30520083 30520083 PRJNA533623_P_NODE_3113_length_1228_cov_11.529563_g2173_i0 PRJNA533623 3113 1228 11.529563 141.58303364 Thermoprotei archaeon 2250277 Archaea Archaea 67 5.16e-8   NR MEM3833456.1 2250277 g2173 i0 22.2 0.759771986970684 311 210 72.1 7 1203 319 34 328 MEM3833456.1 amino acid ABC transporter substrate-binding protein [Thermoprotei archaeon] diamond 933 67 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;