RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA533623" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533623 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28625412 28625412 PRJNA533623_P_NODE_46207_length_312_cov_3.653386_g44431_i0 PRJNA533623 46207 312 3.653386 11.39856432 Minisyncoccota bacterium 2053589 Bacteria Bacteria 128 1.05e-32   NR MCL9971943.1 2053589 g44431 i0 59.6 0.903846153846154 94 37 89.4 1 24 302 167 260 MCL9971943.1 extracellular solute-binding protein [Candidatus Paceibacterota bacterium] diamond 282 128 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28656956 28656956 PRJNA533623_P_NODE_75007_length_207_cov_0.890411_g73226_i0 PRJNA533623 75007 207 0.890411 1.84315077 Minisyncoccota bacterium 2053589 Bacteria Bacteria 99.4 5.209999999999999e-23   NR MEX1013846.1 2053589 g73226 i0 68.2 2.89855072463768 66 21 95.7 0 206 9 128 193 MEX1013846.1 NAD-dependent epimerase/dehydratase family protein [Candidatus Paceibacterota bacterium] diamond 600 99.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29856608 29856608 PRJNA533623_P_NODE_5151_length_1002_cov_21.561105_g3936_i0 PRJNA533623 5151 1002 21.561105 216.0422721 Minisyncoccota bacterium 2053589 Bacteria Bacteria 90.5 8.61e-16   NR HUO50194.1 2053589 g3936 i0 37.4 0.392215568862275 131 71 39.2 3 318 710 134 253 HUO50194.1 fibronectin type III domain-containing protein [Candidatus Paceibacterota bacterium] diamond 393 90.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;