RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA533623" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533623 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24733214 24733214 PRJNA533623_P_NODE_77000_length_202_cov_15.843972_g75219_i0 PRJNA533623 77000 202 15.843972 32.00482344 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 86.3 1.02e-17   NR MBI5476726.1 2049428 g75219 i0 65 6.14851485148515 60 21 89.1 0 202 23 514 573 MBI5476726.1 hypothetical protein [Ignavibacteriales bacterium] diamond 1242 86.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
27867326 27867326 PRJNA533623_P_NODE_78585_length_195_cov_8.149254_g76804_i0 PRJNA533623 78585 195 8.1492540000000009 15.8910453 Ignavibacteria bacterium 2053306 Bacteria Bacteria 124 3.4e-33   NR HRE39820.1 2053306 g76804 i0 100 1.75384615384615 57 0 87.7 0 171 1 180 236 HRE39820.1 LysM peptidoglycan-binding domain-containing protein [Ignavibacteria bacterium] diamond 342 124 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28530659 28530659 PRJNA533623_P_NODE_28767_length_425_cov_2.098901_g26997_i0 PRJNA533623 28767 425 2.098901 8.92032925 Ignavibacterium sp. 2651167 Bacteria Bacteria 82 1.2e-17   NR MBE0538853.1 2651167 g26997 i0 61 1.24941176470588 59 23 41.6 0 78 254 5 63 MBE0538853.1 hypothetical protein [Ignavibacterium sp.] diamond 531 82 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
29162204 29162204 PRJNA533623_P_NODE_34469_length_379_cov_5.534591_g32698_i0 PRJNA533623 34469 379 5.534591 20.97609989 Ignavibacterium sp. 2651167 Bacteria Bacteria 167 7.519999999999999e-48   NR WP_348343998.1 2651167 g32698 i0 97.6 0.672823218997362 85 2 67.3 0 123 377 1 85 WP_348343998.1 IS30 family transposase, partial [Ignavibacterium sp.] diamond 255 167 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;