RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA533623" and tax_phylum = "Candidatus Zixiibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Zixiibacteriota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533623 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30471990 30471990 PRJNA533623_P_NODE_38473_length_354_cov_3.665529_g36700_i0 PRJNA533623 38473 354 3.665529 12.97597266 Pseudomonadati 3379134 Bacteria Bacteria 116 2.24e-27   NR HVP65127.1 2053527 g36700 i0 86.7 7.14406779661017 60 8 50.8 0 45 224 614 673 HVP65127.1 glutamate synthase large subunit [Candidatus Zixiibacteriota bacterium] diamond 2529 117 0.991452991452991 Bacteria FCB group Pseudomonadati Candidatus Zixiibacteriota         Candidatus Zixiibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;