RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA533623" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533623 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26966129 26966129 PRJNA533623_P_NODE_44602_length_320_cov_2.795367_g42828_i0 PRJNA533623 44602 320 2.795367 8.9451744 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 118 3.73e-29   NR UKK00412.1 68886 g42828 i0 70.9 14.390625 79 23 74.1 0 299 63 304 382 UKK00412.1 ribosomal protein L3 [Theileria orientalis] diamond 4605 119 0.991596638655462 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
31246820 31246820 PRJNA533623_P_NODE_7715_length_836_cov_15.223226_g6288_i0 PRJNA533623 7715 836 15.223226 127.26616936 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 167 3.09e-44   NR XP_029217687.1 94643 g6288 i0 47.8 0.65311004784689 182 92 64.2 2 812 276 317 498 XP_029217687.1 putative vacuolar protein sorting-associated protein vps4 [Besnoitia besnoiti] diamond 546 167 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
31879271 31879271 PRJNA533623_P_NODE_78857_length_194_cov_2.511278_g77076_i0 PRJNA533623 78857 194 2.511278 4.87187932 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.017   NR XP_067926279.1 483139 g77076 i0 55.6 0.556701030927835 36 16 55.7 0 5 112 75 110 XP_067926279.1 c6orf165-like protein [Cystoisospora suis] diamond 108 41.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;