RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA533114" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29256319 29256319 PRJNA533114_P_NODE_105569_length_247_cov_0.885057_g105317_i0 PRJNA533114 105569 247 0.885057 2.18609079 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 49.7 1.31e-4   NR HHZ17997.1 1898209 g105317 i0 57.4 1.04453441295547 47 18 54.7 2 215 81 27 73 HHZ17997.1 molecular chaperone DnaJ [Acholeplasmataceae bacterium] diamond 258 49.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31088737 31088737 PRJNA533114_P_NODE_59635_length_308_cov_1.910638_g59383_i0 PRJNA533114 59635 308 1.910638 5.88476504 Tenericutes bacterium HGW-Tenericutes-3 2013846 Bacteria Bacteria 46.6 0.00359   NR PKK97495.1 2013846 g59383 i0 29.2 0.866883116883117 89 57 86.7 1 298 32 150 232 PKK97495.1 MAG: hypothetical protein CVV58_00985 [Tenericutes bacterium HGW-Tenericutes-3] diamond 267 46.6 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium HGW-Tenericutes-3
31815942 31815942 PRJNA533114_P_NODE_105257_length_247_cov_0.885057_g105005_i0 PRJNA533114 105257 247 0.885057 2.18609079 Mycoplasma sp. 2108 Bacteria Bacteria 78.2 1.27e-14   NR MBP5256944.1 2108 g105005 i0 50 0.97165991902834 80 38 97.2 1 242 3 137 214 MBP5256944.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Mycoplasma sp.] diamond 240 78.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;