RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA533114" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26824733 26824733 PRJNA533114_P_NODE_97341_length_250_cov_0.870056_g97089_i0 PRJNA533114 97341 250 0.870056 2.17514 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 67.4 8.49e-11   NR MBO7166272.1 2212473 g97089 i0 52.4 2.7 63 28 73.2 2 64 246 539 601 MBO7166272.1 ATP-dependent RecD-like DNA helicase [Kiritimatiellia bacterium] diamond 675 67.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27109053 27109053 PRJNA533114_P_NODE_25762_length_448_cov_2.130667_g25512_i0 PRJNA533114 25762 448 2.130667 9.54538816 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 56.6 2.67e-6   NR HMP89557.1 2212473 g25512 i0 74.4 0.261160714285714 39 9 26.1 1 448 332 1 38 HMP89557.1 thrombospondin type 3 repeat-containing protein [Kiritimatiellia bacterium] diamond 117 56.6 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31404958 31404958 PRJNA533114_P_NODE_112856_length_244_cov_0.900585_g112604_i0 PRJNA533114 112856 244 0.900585 2.1974274 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 58.5 2.43e-8   NR MFO7937761.1 2212473 g112604 i0 43.9 1.40163934426229 57 32 70.1 0 239 69 110 166 MFO7937761.1 Hsp20/alpha crystallin family protein [Kiritimatiellia bacterium] diamond 342 58.5 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;