RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA533114" and tax_phylum = "Candidatus Methanomethylicota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methanomethylicota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27566496 27566496 PRJNA533114_P_NODE_53184_length_324_cov_1.533865_g52932_i0 PRJNA533114 53184 324 1.533865 4.9697226 Archaea 2157 Archaea Archaea 45.8 0.00142   NR MBM5805508.1 2250257 g52932 i0 55.6 3.86111111111111 45 20 41.7 0 57 191 1 45 MBM5805508.1 50S ribosomal protein P1 [Candidatus Methanomethylicota archaeon] diamond 1251 45.8 1 Archaea   Thermoproteati Candidatus Methanomethylicota         Candidatus Methanomethylicota archaeon
29208643 29208643 PRJNA533114_P_NODE_103149_length_247_cov_2.212644_g102897_i0 PRJNA533114 103149 247 2.212644 5.46523068 root 1 Root_unresolved Root_unresolved 77.4 1.28e-14   NR MCC6019250.1 2250257 g102897 i0 59.7 5.05263157894737 62 25 75.3 0 189 4 3 64 MCC6019250.1 L-threonine 3-dehydrogenase [Candidatus Methanomethylicota archaeon] diamond 1248 77.4 1 Archaea   Thermoproteati Candidatus Methanomethylicota         Candidatus Methanomethylicota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;