RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA532380" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27140460 27140460 PRJNA532380_P_NODE_32982_length_162_cov_1.221239_g32657_i0 PRJNA532380 32982 162 1.221239 1.97840718 Anaerolineales bacterium 2073117 Bacteria Bacteria 42.7 0.0127   NR MDP1547840.1 2073117 g32657 i0 44.7 0.703703703703704 38 21 70.4 0 37 150 87 124 MDP1547840.1 hypothetical protein [Anaerolineales bacterium] diamond 114 42.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29951234 29951234 PRJNA532380_P_NODE_11351_length_273_cov_1.294643_g11026_i0 PRJNA532380 11351 273 1.294643 3.53437539 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 43.1 0.0375   NR MFA4835409.1 2026734 g11026 i0 41.3 0.505494505494505 46 22 50.5 1 38 175 287 327 MFA4835409.1 preprotein translocase subunit SecY [Dehalococcoidia bacterium] diamond 138 43.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30551381 30551381 PRJNA532380_P_NODE_33313_length_162_cov_0.920354_g32988_i0 PRJNA532380 33313 162 0.920354 1.49097348 Anaerolineae bacterium 2052143 Bacteria Bacteria 90.5 2.64e-20   NR MBX3084320.1 2052143 g32988 i0 83 0.981481481481482 53 9 98.1 0 160 2 9 61 MBX3084320.1 DUF2085 domain-containing protein [Anaerolineae bacterium] diamond 159 90.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;