RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA532380" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA532380 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26602526 26602526 PRJNA532380_P_NODE_3741_length_532_cov_1.184265_g3421_i0 PRJNA532380 3741 532 1.184265 6.3002898 uncultured Arthrobacter sp. 114050 Bacteria Bacteria 130 1.1499999999999999e-32   NR WP_346925879.1 114050 g3421 i0 41.5 0.992481203007519 176 101 99.2 1 2 529 13 186 WP_346925879.1 hypothetical protein [uncultured Arthrobacter sp.] diamond 528 130 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter uncultured Arthrobacter sp.
27583024 27583024 PRJNA532380_P_NODE_26484_length_172_cov_1.349593_g26159_i0 PRJNA532380 26484 172 1.349593 2.32129996 Streptomyces luteolus 3043615 Bacteria Bacteria 41.2 0.0469   NR WP_282533273.1 3043615 g26159 i0 47.9 0.837209302325581 48 22 83.7 2 145 2 25 69 WP_282533273.1 hypothetical protein [Streptomyces luteolus] diamond 144 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces luteolus
27930427 27930427 PRJNA532380_P_NODE_25365_length_177_cov_0.968750_g25040_i0 PRJNA532380 25365 177 0.96875 1.7146875 Nocardioides sp. 35761 Bacteria Bacteria 42.7 0.0106   NR HET8664776.1 35761 g25040 i0 38.5 0.88135593220339 52 32 88.1 0 19 174 85 136 HET8664776.1 Rv3235 family protein [Nocardioides sp.] diamond 156 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
28025207 28025207 PRJNA532380_P_NODE_22385_length_190_cov_0.929078_g22060_i0 PRJNA532380 22385 190 0.929078 1.7652482 Nonomuraea corallina 2989783 Bacteria Bacteria 44.3 0.00527   NR WP_270156369.1 2989783 g22060 i0 51.9 0.852631578947368 54 21 78.9 3 17 166 182 234 WP_270156369.1 acyltransferase family protein [Nonomuraea corallina] diamond 162 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea corallina
28088158 28088158 PRJNA532380_P_NODE_26225_length_173_cov_1.395161_g25900_i0 PRJNA532380 26225 173 1.395161 2.41362853 Rubrobacteraceae bacterium 2740537 Bacteria Bacteria 40 0.0457   NR MBA3491742.1 2740537 g25900 i0 47.4 0.658959537572254 38 17 65.9 1 29 142 67 101 MBA3491742.1 AI-2E family transporter [Rubrobacteraceae bacterium] diamond 114 40 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   Rubrobacteraceae bacterium
30425564 30425564 PRJNA532380_P_NODE_12613_length_256_cov_1.574879_g12288_i0 PRJNA532380 12613 256 1.574879 4.03169024 Streptomyces sp. NRRL F-5727 1463871 Bacteria Bacteria 43.9 0.0162   NR WP_051716732.1 1463871 g12288 i0 45.1 1.1953125 51 26 59.8 1 224 72 322 370 WP_051716732.1 MATE family efflux transporter [Streptomyces sp. NRRL F-5727] diamond 306 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-5727
31563204 31563204 PRJNA532380_P_NODE_19156_length_206_cov_0.993631_g18831_i0 PRJNA532380 19156 206 0.993631 2.04687986 Piscicoccus intestinalis 746033 Bacteria Bacteria 42 0.0418   NR WP_068430052.1 746033 g18831 i0 47.5 0.58252427184466 40 21 58.3 0 87 206 205 244 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 120 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis
31957556 31957556 PRJNA532380_P_NODE_13837_length_243_cov_2.520619_g13512_i0 PRJNA532380 13837 243 2.520619 6.12510417 Conexibacter 191494 Bacteria Bacteria 88.6 9.72e-19   NR HMJ02477.1 1929289 g13512 i0 61.1 2.81481481481481 72 26 88.9 1 240 25 227 296 HMJ02477.1 malate dehydrogenase [Conexibacter sp.] diamond 684 88.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;