RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA529924" and tax_superkingdom = "Bacteria"

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tax_kingdom 2

tax_clade 2

tax_superkingdom 1

  • Bacteria · 7 ✖

bioproject 1

  • PRJNA529924 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26665777 26665777 PRJNA529924_P_NODE_4961_length_153_cov_1.556452_g4787_i0 PRJNA529924 4961 153 1.556452 2.38137156 Propionibacteriales bacterium 2015801 Bacteria Bacteria 59.7 3.34e-10   NR MBA2717461.1 2015801 g4787 i0 57.8 0.882352941176471 45 15 86.3 2 2 133 25 66 MBA2717461.1 hypothetical protein [Propionibacteriales bacterium] diamond 135 59.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales     Propionibacteriales bacterium
27741279 27741279 PRJNA529924_P_NODE_3684_length_207_cov_2.404494_g3510_i0 PRJNA529924 3684 207 2.404494 4.97730258 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0125   NR MEI6341235.1 2026799 g3510 i0 46 0.72463768115942 50 25 69.6 1 179 36 109 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 150 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29256301 29256301 PRJNA529924_P_NODE_4409_length_178_cov_1.275168_g4235_i0 PRJNA529924 4409 178 1.275168 2.26979904 Bacillota bacterium 1879010 Bacteria Bacteria 43.5 0.00778   NR HBG15780.1 1879010 g4235 i0 54.8 4.95505617977528 42 19 70.8 0 178 53 196 237 HBG15780.1 peptidoglycan-binding protein LysM [Bacillota bacterium] diamond 882 43.5 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
30314370 30314370 PRJNA529924_P_NODE_1252_length_508_cov_2.544885_g1085_i0 PRJNA529924 1252 508 2.544885 12.9280158 Bacteria 2 Bacteria Bacteria 46.6 0.0159   NR MDD2419128.1 2030927 g1085 i0 40 0.590551181102362 50 30 29.5 0 162 13 115 164 MDD2419128.1 TonB family protein [Bacteroidales bacterium] diamond 300 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
30804240 30804240 PRJNA529924_P_NODE_3214_length_235_cov_1.791262_g3040_i0 PRJNA529924 3214 235 1.791262 4.2094657 Pseudomonas sp. GW531-E2 2070679 Bacteria Bacteria 60.1 5.22e-10   NR WP_218277165.1 2070679 g3040 i0 90 0.382978723404255 30 3 38.3 0 115 204 30 59 WP_218277165.1 hypothetical protein, partial [Pseudomonas sp. GW531-E2] diamond 90 60.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GW531-E2
31025541 31025541 PRJNA529924_P_NODE_2555_length_291_cov_1.839695_g2381_i0 PRJNA529924 2555 291 1.839695 5.35351245 Bacillota bacterium 1879010 Bacteria Bacteria 42 0.014   NR NLL58111.1 1879010 g2381 i0 38.9 0.556701030927835 54 26 55.7 2 213 52 3 49 NLL58111.1 50S ribosomal protein L28 [Bacillota bacterium] diamond 162 42 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
31025542 31025542 PRJNA529924_P_NODE_4275_length_183_cov_2.285714_g4101_i0 PRJNA529924 4275 183 2.285714 4.18285662 Polyangiaceae bacterium 2268199 Bacteria Bacteria 68.2 1.78e-11   NR MEO8906220.1 2268199 g4101 i0 57.4 2.63934426229508 61 24 96.7 1 181 5 1507 1567 MEO8906220.1 hypothetical protein [Polyangiaceae bacterium] diamond 483 68.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;