RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA529924" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529924 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
503277 503277 PRJNA529924_P_NODE_3081_length_244_cov_2.427907_g2907_i0 PRJNA529924 3081 244 2.427907 5.92409308 Metazoa 33208 Chordata Chordata 148 2.09e-43   NR KAI8515332.1 7741 g2907 i0 87.7 30.8483606557377 81 10 99.6 0 243 1 87 167 KAI8515332.1 hypothetical protein Bbelb_061450 [Branchiostoma belcheri] diamond 7527 148 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30235524 30235524 PRJNA529924_P_NODE_4952_length_153_cov_1.895161_g4778_i0 PRJNA529924 4952 153 1.895161 2.89959633 Bombina bombina 8345 Chordata Chordata 45.4 4.06e-4   NR XP_053561789.1 8345 g4778 i0 50 0.745098039215686 38 19 74.5 0 36 149 22 59 XP_053561789.1 cystatin-B [Bombina bombina] diamond 114 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;