RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA529924" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJNA529924 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20905349 20905349 PRJNA529924_P_NODE_4757_length_162_cov_1.781955_g4583_i0 PRJNA529924 4757 162 1.781955 2.8867671 Saponaria officinalis 3572 Plants Plants 73.6 6.9e-14   NR KAK9714567.1 3572 g4583 i0 72.5 4.31481481481481 40 11 74.1 0 39 158 214 253 KAK9714567.1 hypothetical protein RND81_06G103900 [Saponaria officinalis] diamond 699 73.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Caryophyllaceae Saponaria Saponaria officinalis
26760949 26760949 PRJNA529924_P_NODE_4761_length_162_cov_1.578947_g4587_i0 PRJNA529924 4761 162 1.578947 2.55789414 Hordeum vulgare subsp. vulgare 112509 Plants Plants 96.3 1.72e-21   NR BAK01753.1 112509 g4587 i0 83.3 2.96296296296296 54 9 100 0 162 1 188 241 BAK01753.1 predicted protein [Hordeum vulgare subsp. vulgare] diamond 480 96.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
30124059 30124059 PRJNA529924_P_NODE_1572_length_433_cov_2.522277_g1398_i0 PRJNA529924 1572 433 2.522277 10.92145941 Eukaryota 2759 Plants Plants 187 1.4e-54   NR BAK02869.1 112509 g1398 i0 93.5 6.44341801385681 93 6 64.4 0 154 432 43 135 BAK02869.1 predicted protein [Hordeum vulgare subsp. vulgare] diamond 2790 187 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;