RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA529241" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA529241 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27772669 27772669 PRJNA529241_P_NODE_369584_length_173_cov_2.676471_g367262_i0 PRJNA529241 369584 173 2.676471 4.63029483 Fretibacterium sp. 2699746 Bacteria Bacteria 65.1 1.85e-10   NR MBQ9526485.1 2699746 g367262 i0 66.7 5.98265895953757 45 15 78 0 1 135 299 343 MBQ9526485.1 putative aminohydrolase SsnA [Fretibacterium sp.] diamond 1035 65.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp.
29256177 29256177 PRJNA529241_P_NODE_301309_length_173_cov_3.522059_g298987_i0 PRJNA529241 301309 173 3.522059 6.09316207 uncultured Cloacibacillus sp. 889794 Bacteria Bacteria 42 0.0272   NR WP_303150039.1 889794 g298987 i0 76 0.433526011560694 25 6 43.4 0 98 172 158 182 WP_303150039.1 hypothetical protein [uncultured Cloacibacillus sp.] diamond 75 42 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus uncultured Cloacibacillus sp.
30235466 30235466 PRJNA529241_P_NODE_534152_length_151_cov_3.385965_g531830_i0 PRJNA529241 534152 151 3.385965 5.11280715 Synergistaceae bacterium 2053624 Bacteria Bacteria 55.8 2.49e-7   NR MDR1378183.1 2053624 g531830 i0 39.1 1.82781456953642 92 14 99.3 1 1 150 220 311 MDR1378183.1 AAA family ATPase [Synergistaceae bacterium] diamond 276 55.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32354023 32354023 PRJNA529241_P_NODE_258219_length_173_cov_4.257353_g255897_i0 PRJNA529241 258219 173 4.257353 7.36522069 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 44.3 0.00414   NR WP_299299162.1 1678694 g255897 i0 96 0.433526011560694 25 1 43.4 0 98 172 32 56 WP_299299162.1 hypothetical protein [uncultured Fretibacterium sp.] diamond 75 44.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;