RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA529241" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27123951 27123951 PRJNA529241_P_NODE_87622_length_230_cov_3.528497_g85300_i0 PRJNA529241 87622 230 3.528497 8.1155431 FCB group 1783270 Bacteria Bacteria 47.4 6.18e-4   NR MEF8796398.1 1885341 g85300 i0 35.1 2.66086956521739 74 46 96.5 1 224 3 157 228 MEF8796398.1 class I SAM-dependent methyltransferase [Salinivenus sp.] diamond 612 47.8 0.99163179916318 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinivenus Salinivenus sp.
29271389 29271389 PRJNA529241_P_NODE_540809_length_151_cov_3.192982_g538487_i0 PRJNA529241 540809 151 3.192982 4.82140282 FCB group 1783270 Bacteria Bacteria 56.2 2.3e-8   NR WP_095509659.1 1196024 g538487 i0 100 3.17880794701987 25 0 49.7 0 76 150 31 55 WP_095509659.1 GPW/gp25 family protein [Rubrivirga marina] diamond 480 56.2 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina
31578077 31578077 PRJNA529241_P_NODE_371836_length_173_cov_2.654412_g369514_i0 PRJNA529241 371836 173 2.654412 4.59213276 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0143   NR MFT5126450.1 2306054 g369514 i0 75 2.11560693641619 24 6 41.6 0 75 4 176 199 MFT5126450.1 D-glycerate 3-kinase [Rhodothermales bacterium] diamond 366 42.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;