RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA529241" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27077509 27077509 PRJNA529241_P_NODE_425062_length_166_cov_2.085271_g422740_i0 PRJNA529241 425062 166 2.085271 3.46154986 Ostertagia ostertagi 6317 Nematoda Nematoda 79 4.1e-16   NR KAK6031660.1 6317 g422740 i0 63.6 4.89759036144578 55 20 99.4 0 2 166 106 160 KAK6031660.1 DNA (cytosine-5-)-methyltransferase [Ostertagia ostertagi] diamond 813 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
27898553 27898553 PRJNA529241_P_NODE_265425_length_173_cov_4.110294_g263103_i0 PRJNA529241 265425 173 4.110294 7.11080862 Diploscapter pachys 2018661 Nematoda Nematoda 43.9 0.00569   NR PAV84478.1 2018661 g263103 i0 90 0.346820809248555 20 2 34.7 0 60 1 342 361 PAV84478.1 hypothetical protein WR25_18286 [Diploscapter pachys] diamond 60 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
29004312 29004312 PRJNA529241_P_NODE_449208_length_157_cov_1.233333_g446886_i0 PRJNA529241 449208 157 1.233333 1.93633281 Trichinella pseudospiralis 6337 Nematoda Nematoda 40 0.0173   NR KRY87651.1 6337 g446886 i0 44.2 0.821656050955414 43 24 82.2 0 157 29 17 59 KRY87651.1 hypothetical protein T4D_50 [Trichinella pseudospiralis] diamond 129 40 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
29303134 29303134 PRJNA529241_P_NODE_519889_length_151_cov_3.956140_g517567_i0 PRJNA529241 519889 151 3.95614 5.9737714 Trichuris 36086 Nematoda Nematoda 46.2 6.45e-4   NR CDW54946.1 36087 g517567 i0 76 2.48344370860927 25 6 49.7 0 150 76 37 61 CDW54946.1 laminin subunit beta 1 [Trichuris trichiura] diamond 375 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
29382799 29382799 PRJNA529241_P_NODE_419429_length_168_cov_2.977099_g417107_i0 PRJNA529241 419429 168 2.977099 5.00152632 Ditylenchus destructor 166010 Nematoda Nematoda 41.6 0.0313   NR KAI1698213.1 166010 g417107 i0 33.3 0.803571428571429 45 22 66.1 1 20 130 134 178 KAI1698213.1 hypothetical protein Ddc_19234 [Ditylenchus destructor] diamond 135 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
29982696 29982696 PRJNA529241_P_NODE_314491_length_173_cov_3.323529_g312169_i0 PRJNA529241 314491 173 3.323529 5.74970517 Cylicocyclus nassatus 53992 Nematoda Nematoda 53.1 3.1e-6   NR CAJ0600676.1 53992 g312169 i0 70.6 0.589595375722543 34 10 59 0 103 2 86 119 CAJ0600676.1 unnamed protein product [Cylicocyclus nassatus] diamond 102 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
30614431 30614431 PRJNA529241_P_NODE_196173_length_173_cov_6.507353_g193851_i0 PRJNA529241 196173 173 6.507353 11.25772069 Ancylostoma duodenale 51022 Nematoda Nematoda 45.1 0.00129   NR KIH55903.1 51022 g193851 i0 81 2.1849710982659 21 4 36.4 0 63 1 73 93 KIH55903.1 putative phospholipid hydroperoxide glutathione peroxidase [Ancylostoma duodenale] diamond 378 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
31025451 31025451 PRJNA529241_P_NODE_415015_length_170_cov_1.187970_g412693_i0 PRJNA529241 415015 170 1.18797 2.019549 Necator americanus 51031 Nematoda Nematoda 67.4 4.4e-12   NR ETN72287.1 51031 g412693 i0 54.9 2.71764705882353 51 23 90 0 164 12 21 71 ETN72287.1 hypothetical protein NECAME_18912 [Necator americanus] diamond 462 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31483387 31483387 PRJNA529241_P_NODE_517056_length_151_cov_4.096491_g514734_i0 PRJNA529241 517056 151 4.096491 6.18570141 Rhabditida 6236 Nematoda Nematoda 43.9 6.97e-4   NR KAK5967996.1 6319 g514734 i0 64.7 5.3841059602649 34 11 65.6 1 51 149 36 69 KAK5967996.1 hypothetical protein GCK32_012980 [Trichostrongylus colubriformis] diamond 813 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;