RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA529241" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19626738 19626738 PRJNA529241_P_NODE_411836_length_171_cov_1.455224_g409514_i0 PRJNA529241 411836 171 1.455224 2.48843304 Eukaryota 2759 Fungi Fungi 81.6 5.81e-17   NR XP_052966302.1 110093 g409514 i0 64.3 4.91228070175439 56 20 98.2 0 3 170 94 149 XP_052966302.1 14-3-3 protein [Polychytrium aggregatum] diamond 840 81.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
26728842 26728842 PRJNA529241_P_NODE_360961_length_173_cov_2.757353_g358639_i0 PRJNA529241 360961 173 2.757353 4.77022069 Rhizoclosmatium globosum 329046 Fungi Fungi 41.2 0.0481   NR ORY49429.1 329046 g358639 i0 73.1 0.450867052023121 26 5 41.6 1 74 3 46 71 ORY49429.1 WD40 repeat-like protein [Rhizoclosmatium globosum] diamond 78 41.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum
27377401 27377401 PRJNA529241_P_NODE_171803_length_176_cov_1.122302_g169481_i0 PRJNA529241 171803 176 1.122302 1.97525152 Chytriomyces 109882 Fungi Fungi 80.9 4.94e-16   NR KAJ3240266.1 4814 g169481 i0 64.9 9.76704545454546 57 19 97.2 1 174 4 204 259 KAJ3240266.1 Calreticulin-1 [Chytriomyces hyalinus] diamond 1719 80.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
29856302 29856302 PRJNA529241_P_NODE_259411_length_173_cov_4.227941_g257089_i0 PRJNA529241 259411 173 4.227941 7.31433793 Chytriomyces sp. MP71 1882861 Fungi Fungi 46.6 6.07e-4   NR KAI8607392.1 1882861 g257089 i0 41.1 0.971098265895954 56 31 93.6 1 166 5 25 80 KAI8607392.1 hypothetical protein BC830DRAFT_1175363 [Chytriomyces sp. MP71] diamond 168 46.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces sp. MP71

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;