RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA529241" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA529241 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27330460 27330460 PRJNA529241_P_NODE_374543_length_173_cov_2.632353_g372221_i0 PRJNA529241 374543 173 2.632353 4.55397069 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 42.4 0.0144   NR HMS90697.1 2927939 g372221 i0 68.2 0.38150289017341 22 7 38.2 0 168 103 48 69 HMS90697.1 hypothetical protein [Candidatus Absconditabacterales bacterium] diamond 66 42.4 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium
28593503 28593503 PRJNA529241_P_NODE_473467_length_151_cov_8.438596_g471145_i0 PRJNA529241 473467 151 8.438596 12.74227996 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 42.7 0.0104   NR AKH32809.1 1643353 g471145 i0 36.5 1.03311258278146 52 30 97.4 1 149 3 77 128 AKH32809.1 Microbial collagenase precursor [candidate division SR1 bacterium Aalborg_AAW-1] diamond 156 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1
29698055 29698055 PRJNA529241_P_NODE_433310_length_163_cov_1.238095_g430988_i0 PRJNA529241 433310 163 1.238095 2.01809485 candidate division SR1 bacterium 2044938 Bacteria Bacteria 97.8 3.96e-24   NR PZM87144.1 2044938 g430988 i0 90.6 0.975460122699387 53 5 97.5 0 163 5 112 164 PZM87144.1 MAG: hypothetical protein DLD55_02850 [candidate division SR1 bacterium] diamond 159 97.8 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
32637834 32637834 PRJNA529241_P_NODE_15540_length_593_cov_8.771583_g13518_i0 PRJNA529241 15540 593 8.771583 52.01548719 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 51.2 7.13e-5   NR HMS90858.1 2927939 g13518 i0 59 0.197301854974705 39 16 19.7 0 300 416 57 95 HMS90858.1 GatB/YqeY domain-containing protein [Candidatus Absconditabacterales bacterium] diamond 117 51.2 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;