RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA527965" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA527965 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31261740 31261740 PRJNA527965_S_NODE_4655_length_174_cov_1.446043_g4572_i0 PRJNA527965 4655 174 1.446043 2.51611482 root 1 Root_unresolved Root_unresolved 56.6 1.76e-7   NR QHG77598.1 1280 g4572 i0 61.9 13.7586206896552 42 16 72.4 0 157 32 154 195 QHG77598.1 hypothetical protein EAX85_13915 [Staphylococcus aureus] diamond 2394 57 0.992982456140351 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
31957508 31957508 PRJNA527965_S_NODE_2697_length_233_cov_4.060606_g2614_i0 PRJNA527965 2697 233 4.060606 9.46121198 root 1 Root_unresolved Root_unresolved 60.5 1.68e-8   NR QHG77598.1 1280 g2614 i0 49.2 13.0429184549356 59 28 73.4 1 45 215 153 211 QHG77598.1 hypothetical protein EAX85_13915 [Staphylococcus aureus] diamond 3039 60.8 0.995065789473684 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;