RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA527965" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA527965 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29225027 29225027 PRJNA527965_S_NODE_6209_length_151_cov_1.181034_g6126_i0 PRJNA527965 6209 151 1.181034 1.78336134 Bifidobacteriaceae bacterium MCC 2291324 Bacteria Bacteria 39.7 0.0273   NR GDZ53054.1 2569517 g6126 i0 56.3 0.635761589403974 32 14 63.6 0 2 97 15 46 GDZ53054.1 hypothetical protein MCC02035_17470 [Bifidobacteriaceae bacterium MCC02035] diamond 96 39.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae   Bifidobacteriaceae bacterium MCC02035
32179252 32179252 PRJNA527965_S_NODE_158_length_731_cov_3.182471_g106_i0 PRJNA527965 158 731 3.182471 23.26386301 Bacillati 1783272 Bacteria Bacteria 48.5 0.00178   NR MEA2136664.1 2586742 g106 i0 52.3 0.714090287277702 44 21 18.1 0 60 191 44 87 MEA2136664.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 522 48.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;