RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA527965" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA527965 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15799514 15799514 PRJNA527965_S_NODE_2973_length_221_cov_4.543011_g2890_i0 PRJNA527965 2973 221 4.543011 10.04005431 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 76.3 4.38e-14   NR MDD2745034.1 2044595 g2890 i0 63 0.990950226244344 73 21 99.1 2 1 219 307 373 MDD2745034.1 S-layer homology domain-containing protein [Candidatus Altimarinota bacterium] diamond 219 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27804075 27804075 PRJNA527965_S_NODE_5624_length_158_cov_1.243902_g5541_i0 PRJNA527965 5624 158 1.243902 1.96536516 Candidatus Dependentiae bacterium HGW-Dependentiae-1 2013760 Bacteria Bacteria 43.9 0.00181   NR PKN03121.1 2013760 g5541 i0 54.5 0.835443037974684 44 20 83.5 0 133 2 31 74 PKN03121.1 MAG: hypothetical protein CVU75_03890 [Candidatus Dependentiae bacterium HGW-Dependentiae-1] diamond 132 43.9 1 Bacteria Bacteria candidate phyla             Candidatus Dependentiae bacterium HGW-Dependentiae-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;