RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA526367" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA526367 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31246451 31246451 PRJNA526367_P_NODE_49595_length_167_cov_10.779661_g49385_i0 PRJNA526367 49595 167 10.779661 18.002033870000002 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 60.5 7.28e-9   NR KAI2488951.1 210448 g49385 i0 60.9 1.77844311377246 46 18 82.6 0 2 139 13 58 KAI2488951.1 carbohydrate kinase-like protein [Fragilaria crotonensis] diamond 297 60.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
31594609 31594609 PRJNA526367_P_NODE_30536_length_323_cov_2.850365_g30327_i0 PRJNA526367 30536 323 2.850365 9.20667895 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0391   NR EJK50985.1 159749 g30327 i0 54.8 0.287925696594427 31 14 28.8 0 316 224 1215 1245 EJK50985.1 hypothetical protein THAOC_29894, partial [Thalassiosira oceanica] diamond 93 43.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;