RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA520845" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA520845 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28940729 28940729 PRJNA520845_P_NODE_56068_length_498_cov_1.764706_g54574_i0 PRJNA520845 56068 498 1.764706 8.78823588 Mollicutes bacterium 37628 Bacteria Bacteria 46.2 0.0281   NR HHU54751.1 37628 g54574 i0 27 0.825301204819277 137 93 81.3 5 44 448 67 198 HHU54751.1 hypothetical protein [Mollicutes bacterium] diamond 411 46.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium
30582598 30582598 PRJNA520845_P_NODE_233953_length_247_cov_1.270115_g232454_i0 PRJNA520845 233953 247 1.270115 3.13718405 Candidatus Izimaplasma bacterium ZiA1 2024899 Bacteria Bacteria 124 6.23e-33   NR PAT01328.1 2024899 g232454 i0 70.9 0.959514170040486 79 23 96 0 238 2 135 213 PAT01328.1 exodeoxyribonuclease III [Candidatus Izimaplasma bacterium ZiA1] diamond 237 124 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. ZiA1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;