RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA520845" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10691704 10691704 PRJNA520845_P_NODE_127929_length_330_cov_1.482490_g126430_i0 PRJNA520845 127929 330 1.48249 4.892217 Fidelibacterota bacterium 2026760 Bacteria Bacteria 117 4.68e-29   NR MAP67408.1 2026760 g126430 i0 60 5.40909090909091 85 32 77.3 1 330 76 244 326 MAP67408.1 hypothetical protein [Fidelibacterota bacterium] diamond 1785 117 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
27740995 27740995 PRJNA520845_P_NODE_241104_length_246_cov_0.890173_g239605_i0 PRJNA520845 241104 246 0.890173 2.18982558 Fidelibacterota bacterium 2026760 Bacteria Bacteria 43.9 0.0155   NR MBT4111931.1 2026760 g239605 i0 39 1.4390243902439 59 36 72 0 189 13 205 263 MBT4111931.1 hypothetical protein [Fidelibacterota bacterium] diamond 354 43.9 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32195333 32195333 PRJNA520845_P_NODE_119718_length_341_cov_1.149254_g118219_i0 PRJNA520845 119718 341 1.149254 3.91895614 Fidelibacterota bacterium 2026760 Bacteria Bacteria 68.2 1.4e-10   NR MDP7027523.1 2026760 g118219 i0 43.2 3.0791788856305 81 44 71.3 2 56 298 230 308 MDP7027523.1 M14 family metallopeptidase [Fidelibacterota bacterium] diamond 1050 68.2 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;