RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA513467" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA513467 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9414803 9414803 PRJNA513467_S_NODE_168_length_676_cov_2.219092_g148_i0 PRJNA513467 168 676 2.219092 15.00106192 Leptotrichiaceae 1129771 Bacteria Bacteria 356 8.67e-121   NR WP_066895212.1 1162717 g148 i0 88.2 2.70266272189349 203 24 90.1 0 68 676 1 203 WP_066895212.1 UDP-glucose 4-epimerase GalE [Pseudostreptobacillus hongkongensis] diamond 1827 356 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudostreptobacillus Pseudostreptobacillus hongkongensis
17063939 17063939 PRJNA513467_S_NODE_4574_length_186_cov_2.966443_g4551_i0 PRJNA513467 4574 186 2.966443 5.51758398 Pseudostreptobacillus hongkongensis 1162717 Bacteria Bacteria 117 3.19e-30   NR WP_066895212.1 1162717 g4551 i0 90.2 0.983870967741935 61 6 98.4 0 185 3 204 264 WP_066895212.1 UDP-glucose 4-epimerase GalE [Pseudostreptobacillus hongkongensis] diamond 183 117 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudostreptobacillus Pseudostreptobacillus hongkongensis
30582476 30582476 PRJNA513467_S_NODE_253_length_575_cov_3.026022_g230_i0 PRJNA513467 253 575 3.026022 17.3996265 Streptobacillus moniliformis 34105 Bacteria Bacteria 117 7.99e-28   NR WP_064590201.1 34105 g230 i0 75.4 0.36 69 17 36 0 1 207 258 326 WP_064590201.1 UDP-glucose 4-epimerase GalE [Streptobacillus moniliformis] diamond 207 117 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;