RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA513467" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA513467 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28197811 28197811 PRJNA513467_S_NODE_8506_length_150_cov_1.035398_g8483_i0 PRJNA513467 8506 150 1.035398 1.553097 root 1 Root_unresolved Root_unresolved 83.2 1.21e-18   NR WP_117485247.1 83382 g8483 i0 72.3 2.86 47 13 94 0 8 148 77 123 WP_117485247.1 hypothetical protein [Kitasatospora xanthocidica] diamond 429 83.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora xanthocidica
31467825 31467825 PRJNA513467_S_NODE_3736_length_200_cov_2.392638_g3713_i0 PRJNA513467 3736 200 2.392638 4.785276 unclassified Microbacterium 2609290 Bacteria Bacteria 51.6 1.54e-5   NR WP_105525985.1 2609290 g3713 i0 47.1 2.13 51 26 76.5 1 200 48 336 385 WP_105525985.1 MULTISPECIES: sedoheptulose 7-phosphate cyclase [unclassified Microbacterium] diamond 426 51.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium  
31688967 31688967 PRJNA513467_S_NODE_4617_length_186_cov_1.308725_g4594_i0 PRJNA513467 4617 186 1.308725 2.4342285 Pseudonocardia sp. 60912 Bacteria Bacteria 42.7 0.00579   NR HWM59079.1 60912 g4594 i0 80.8 0.419354838709677 26 5 41.9 0 84 161 89 114 HWM59079.1 mycothiol system anti-sigma-R factor [Pseudonocardia sp.] diamond 78 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;