RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA513467" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA513467 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15138951 15138951 PRJNA513467_S_NODE_2892_length_219_cov_4.060440_g2869_i0 PRJNA513467 2892 219 4.06044 8.8923636 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 122 7.7699999999999995e-31   NR MCE2925315.1 2026777 g2869 i0 79.2 0.986301369863014 72 15 98.6 0 218 3 227 298 MCE2925315.1 class II fumarate hydratase [Phycisphaeraceae bacterium] diamond 216 122 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
27155371 27155371 PRJNA513467_S_NODE_1542_length_279_cov_3.004132_g1519_i0 PRJNA513467 1542 279 3.004132 8.38152828 Bacteria 2 Bacteria Bacteria 132 1.81e-33   NR HSX10464.1 2047757 g1519 i0 75.7 2.41935483870968 74 18 79.6 0 226 5 823 896 HSX10464.1 excinuclease ABC subunit UvrA [Chlamydiales bacterium] diamond 675 132 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29966265 29966265 PRJNA513467_S_NODE_1491_length_283_cov_1.890244_g1468_i0 PRJNA513467 1491 283 1.890244 5.34939052 Bacteria 2 Bacteria Bacteria 74.3 3.51e-13   NR MDB6124125.1 2024890 g1468 i0 52.1 7.70671378091873 73 33 77.4 2 6 224 298 368 MDB6124125.1 hypothetical protein [Pedosphaera sp.] diamond 2181 74.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;