RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA513467" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA513467 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28750906 28750906 PRJNA513467_S_NODE_5767_length_172_cov_1.444444_g5744_i0 PRJNA513467 5767 172 1.444444 2.48444368 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 100 4.6099999999999997e-23   NR XP_004344010.1 1257118 g5744 i0 81.5 1.81395348837209 54 10 94.2 0 9 170 614 667 XP_004344010.1 prolyl oligopeptidase [Acanthamoeba castellanii str. Neff] diamond 312 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29445338 29445338 PRJNA513467_S_NODE_5950_length_170_cov_1.315789_g5927_i0 PRJNA513467 5950 170 1.315789 2.2368413 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82 6.38e-17   NR PRP80728.1 1890364 g5927 i0 69.6 0.988235294117647 56 17 98.8 0 169 2 237 292 PRP80728.1 ras-related protein Rab-2A [Planoprotostelium fungivorum] diamond 168 82 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29761157 29761157 PRJNA513467_S_NODE_6371_length_166_cov_1.317829_g6348_i0 PRJNA513467 6371 166 1.317829 2.18759614 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 92.4 4.17e-20   NR PRP76139.1 1890364 g6348 i0 78 0.903614457831325 50 11 90.4 0 1 150 382 431 PRP76139.1 aldehyde dehydrogenase [Planoprotostelium fungivorum] diamond 150 92.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;