RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA512489" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA512489 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30456675 30456675 PRJNA512489_S_NODE_33_length_608_cov_14.573451_g28_i0 PRJNA512489 33 608 14.573451 88.60658208 bacterium 1869227 Bacteria Bacteria 97.8 1.05e-22   NR MFN9907051.1 1869227 g28 i0 66.2 0.379934210526316 77 26 38 0 421 191 2 78 MFN9907051.1 hypothetical protein [bacterium] diamond 231 97.8 1 Bacteria               bacterium
30961916 30961916 PRJNA512489_S_NODE_674_length_209_cov_4.710843_g669_i0 PRJNA512489 674 209 4.710843 9.84566187 Streptomyces siamensis 1274986 Bacteria Bacteria 42.4 0.0331   NR WP_345657834.1 1274986 g669 i0 37.5 0.803827751196172 56 35 80.4 0 23 190 144 199 WP_345657834.1 FUSC family protein [Streptomyces siamensis] diamond 168 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces siamensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;