RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA512103" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA512103 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4312983 4312983 PRJNA512103_P_NODE_2724_length_1028_cov_1.429009_g2454_i0 PRJNA512103 2724 1028 1.429009 14.69021252 Chondrichthyes 7777 Chordata Chordata 243 4.719999999999998e-69   NR XP_048459070.1 259920 g2454 i0 56.1 9.30058365758755 214 92 62.5 1 3 644 384 595 XP_048459070.1 WD repeat-containing protein 3 isoform X2 [Rhincodon typus] diamond 9561 243 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
11964577 11964577 PRJNA512103_P_NODE_21250_length_207_cov_1.006329_g20838_i0 PRJNA512103 21250 207 1.006329 2.08310103 Branchiostoma 7737 Chordata Chordata 57.4 1.62e-7   NR CAH1272651.1 7740 g20838 i0 57.8 13.8550724637681 45 16 60.9 1 207 82 508 552 CAH1272651.1 ZNF569 [Branchiostoma lanceolatum] diamond 2868 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
22162227 22162227 PRJNA512103_P_NODE_10818_length_352_cov_1.686469_g10406_i0 PRJNA512103 10818 352 1.686469 5.93637088 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 203 7.7e-62   NR KAK9393150.1 8729 g10406 i0 78.9 141.213068181818 114 24 97.2 0 350 9 195 308 KAK9393150.1 Ras-related C3 botulinum toxin substrate 1 [Crotalus adamanteus] diamond 49707 205 0.990243902439024 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
26902911 26902911 PRJNA512103_P_NODE_11881_length_326_cov_0.913357_g11469_i0 PRJNA512103 11881 326 0.913357 2.97754382 Chordata 7711 Chordata Chordata 214 7.23e-68   NR NP_001080171.1 8355 g11469 i0 96.2 43.0674846625767 106 4 97.5 0 7 324 1 106 NP_001080171.1 ribosomal protein S6 L homeolog [Xenopus laevis] diamond 14040 215 0.995348837209302 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
26965968 26965968 PRJNA512103_P_NODE_32262_length_166_cov_0.888889_g31850_i0 PRJNA512103 32262 166 0.888889 1.47555574 Chordata 7711 Chordata Chordata 109 1.55e-27   NR KAG6940506.1 8475 g31850 i0 100 29.2771084337349 54 0 97.6 0 3 164 214 267 KAG6940506.1 proteasome subunit alpha 2, partial [Chelydra serpentina] diamond 4860 109 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelydridae Chelydra Chelydra serpentina
26982232 26982232 PRJNA512103_P_NODE_19722_length_217_cov_0.791667_g19310_i0 PRJNA512103 19722 217 0.791667 1.71791739 Bufotes viridis 30338 Chordata Chordata 42 0.0492   NR CAK8629749.1 30338 g19310 i0 64.3 0.387096774193548 28 10 38.7 0 5 88 335 362 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 84 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27045575 27045575 PRJNA512103_P_NODE_31182_length_168_cov_0.873950_g30770_i0 PRJNA512103 31182 168 0.87395 1.468236 Scyliorhinus torazame 75743 Chordata Chordata 107 1.27e-26   NR GCB81313.1 75743 g30770 i0 98.2 74.6428571428571 55 1 98.2 0 167 3 150 204 GCB81313.1 hypothetical protein [Scyliorhinus torazame] diamond 12540 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
27123857 27123857 PRJNA512103_P_NODE_24842_length_189_cov_1.128571_g24430_i0 PRJNA512103 24842 189 1.128571 2.13299919 Metazoa 33208 Chordata Chordata 48.1 2.33e-4   NR KAI8518019.1 7741 g24430 i0 56.5 2.17460317460317 46 20 73 0 46 183 569 614 KAI8518019.1 hypothetical protein Bbelb_040360 [Branchiostoma belcheri] diamond 411 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27393380 27393380 PRJNA512103_P_NODE_18843_length_224_cov_1.000000_g18431_i0 PRJNA512103 18843 224 1 2.24 Bufotes viridis 30338 Chordata Chordata 42.4 0.0396   NR CAK8609802.1 30338 g18431 i0 60 0.709821428571429 30 12 40.2 0 94 5 1 30 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 159 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27408888 27408888 PRJNA512103_P_NODE_13483_length_292_cov_1.032922_g13071_i0 PRJNA512103 13483 292 1.032922 3.01613224 Anura 8342 Chordata Chordata 191 1.03e-59   NR NP_001080766.1 8355 g13071 i0 92.8 12.9452054794521 97 7 99.7 0 291 1 51 147 NP_001080766.1 ribosomal protein L15 L homeolog [Xenopus laevis] diamond 3780 192 0.994791666666667 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
27913646 27913646 PRJNA512103_P_NODE_17745_length_233_cov_1.021739_g17333_i0 PRJNA512103 17745 233 1.021739 2.38065187 Aves 8782 Chordata Chordata 96.7 9.82e-22   NR CAK6565781.1 9079 g17333 i0 64.4 22.0815450643777 73 26 94 0 226 8 125 197 CAK6565781.1 unnamed protein product [Alectoris rufa] diamond 5145 96.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
30123956 30123956 PRJNA512103_P_NODE_25932_length_185_cov_0.911765_g25520_i0 PRJNA512103 25932 185 0.911765 1.68676525 Anura 8342 Chordata Chordata 119 8.909999999999998e-32   NR KAE8633244.1 8364 g25520 i0 90.2 24.6486486486486 61 6 98.9 0 3 185 103 163 KAE8633244.1 hypothetical protein XENTR_v10001824 [Xenopus tropicalis] diamond 4560 119 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30471834 30471834 PRJNA512103_P_NODE_16233_length_248_cov_4.341709_g15821_i0 PRJNA512103 16233 248 4.341709 10.76743832 Chordata 7711 Chordata Chordata 83.2 2.2e-16   NR NP_033640.1 7748 g15821 i0 94.7 223.838709677419 38 2 46 0 215 102 237 274 NP_033640.1 cytochrome c oxidase subunit I [Lampetra fluviatilis] diamond 55512 83.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
30534858 30534858 PRJNA512103_P_NODE_12213_length_318_cov_1.539033_g11801_i0 PRJNA512103 12213 318 1.539033 4.89412494 Chordata 7711 Chordata Chordata 196 3.55e-61   NR XP_025783231.1 9696 g11801 i0 97.1 37.6415094339623 105 3 99.1 0 2 316 102 206 XP_025783231.1 40S ribosomal protein S7 [Puma concolor] diamond 11970 197 0.99492385786802 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Puma Puma concolor
30977385 30977385 PRJNA512103_P_NODE_26314_length_183_cov_1.395522_g25902_i0 PRJNA512103 26314 183 1.395522 2.55380526 Aves 8782 Chordata Chordata 46.2 9.74e-4   NR XP_054699623.1 9117 g25902 i0 40 14.7540983606557 60 32 98.4 1 3 182 299 354 XP_054699623.1 UPF0488 protein C8orf33 homolog isoform X2 [Grus americana] diamond 2700 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus americana
31293201 31293201 PRJNA512103_P_NODE_17255_length_237_cov_1.888298_g16843_i0 PRJNA512103 17255 237 1.888298 4.47526626 Chordata 7711 Chordata Chordata 97.1 8.71e-24   NR AAL08597.1 7892 g16843 i0 96 183.911392405063 50 2 63.3 0 33 182 28 77 AAL08597.1 NADH dehydrogenase subunit 3 [Neoceratodus forsteri] diamond 43587 97.8 0.992842535787321 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Ceratodontidae Neoceratodus Neoceratodus forsteri
32132124 32132124 PRJNA512103_P_NODE_30138_length_170_cov_1.181818_g29726_i0 PRJNA512103 30138 170 1.181818 2.0090906 Polypterus senegalus 55291 Chordata Chordata 97.4 1.61e-22   NR KAG2455457.1 55291 g29726 i0 98 14.6823529411765 49 1 86.5 0 3 149 281 329 KAG2455457.1 RS11 protein, partial [Polypterus senegalus] diamond 2496 98.2 0.991853360488798 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32274120 32274120 PRJNA512103_P_NODE_30458_length_169_cov_1.300000_g30046_i0 PRJNA512103 30458 169 1.3 2.197 Chordata 7711 Chordata Chordata 100 2.5399999999999998e-24   NR XP_055512776.1 7782 g30046 i0 94.5 42.9585798816568 55 3 97.6 0 167 3 100 154 XP_055512776.1 60S ribosomal protein L19 [Leucoraja erinaceus] diamond 7260 101 0.99009900990099 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;