RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA512103" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA512103 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26633944 26633944 PRJNA512103_P_NODE_22221_length_201_cov_1.236842_g21809_i0 PRJNA512103 22221 201 1.236842 2.48605242 Actinomycetota bacterium 2900548 Bacteria Bacteria 41.6 0.0438   NR MBW3639918.1 2900548 g21809 i0 44.2 0.776119402985075 52 29 77.6 0 159 4 96 147 MBW3639918.1 hypothetical protein [Actinomycetota bacterium] diamond 156 41.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
26855879 26855879 PRJNA512103_P_NODE_31141_length_168_cov_0.873950_g30729_i0 PRJNA512103 31141 168 0.87395 1.468236 Kocuria varians 1272 Bacteria Bacteria 102 1.38e-26   NR CAL8900649.1 1272 g30729 i0 92.2 0.910714285714286 51 4 91.1 0 164 12 41 91 CAL8900649.1 hypothetical protein PGAAJM_12650 [Kocuria varians] diamond 153 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria varians
28908482 28908482 PRJNA512103_P_NODE_34488_length_162_cov_0.920354_g34076_i0 PRJNA512103 34488 162 0.920354 1.49097348 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 94.4 8.42e-21   NR HKH25519.1 2080302 g34076 i0 95.8 4.44444444444444 48 2 88.9 0 153 10 661 708 HKH25519.1 type I DNA topoisomerase [Acidimicrobiia bacterium] diamond 720 94.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;