RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA512103" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 4 ✖

bioproject 1

  • PRJNA512103 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28213909 28213909 PRJNA512103_P_NODE_19566_length_218_cov_0.875740_g19154_i0 PRJNA512103 19566 218 0.87574 1.9091132 Actinidia rufa 165716 Plants Plants 43.9 0.0106   NR GFZ12955.1 165716 g19154 i0 37.2 0.591743119266055 43 27 59.2 0 17 145 99 141 GFZ12955.1 formin homology5 [Actinidia rufa] diamond 129 43.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Actinidiaceae Actinidia Actinidia rufa
28498487 28498487 PRJNA512103_P_NODE_30767_length_169_cov_0.866667_g30355_i0 PRJNA512103 30767 169 0.866667 1.46466723 Triticum aestivum 4565 Plants Plants 42 0.0254   NR SPT19547.1 4565 g30355 i0 40.5 0.656804733727811 37 22 65.7 0 18 128 837 873 SPT19547.1 unnamed protein product [Triticum aestivum] diamond 111 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
30803837 30803837 PRJNA512103_P_NODE_11194_length_342_cov_1.191126_g10782_i0 PRJNA512103 11194 342 1.191126 4.07365092 Humulus lupulus 3486 Plants Plants 74.3 8.29e-13   NR XP_062118465.1 3486 g10782 i0 35.5 0.815789473684211 93 51 81.6 1 62 340 4 87 XP_062118465.1 uncharacterized mitochondrial protein AtMg00810-like [Humulus lupulus] diamond 279 74.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
32005454 32005454 PRJNA512103_P_NODE_23378_length_195_cov_1.815068_g22966_i0 PRJNA512103 23378 195 1.815068 3.5393826 Prunus armeniaca 36596 Plants Plants 42 0.038   NR CAL2237091.1 36596 g22966 i0 41.9 0.953846153846154 62 36 95.4 0 192 7 361 422 CAL2237091.1 unnamed protein product [Prunus armeniaca] diamond 186 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus armeniaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;