RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA512103" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA512103 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6214336 6214336 PRJNA512103_P_NODE_23885_length_193_cov_1.263889_g23473_i0 PRJNA512103 23885 193 1.263889 2.43930577 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 1.95e-28   NR YP_007890775.1 221724 g23473 i0 86.2 9.97927461139896 58 8 90.2 0 188 15 286 343 YP_007890775.1 cytochrome c oxidase subunit I [Seculamonas ecuadoriensis] diamond 1926 115 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
29856027 29856027 PRJNA512103_P_NODE_32411_length_166_cov_0.888889_g31999_i0 PRJNA512103 32411 166 0.888889 1.47555574 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 82.8 1.01e-16   NR XP_044550623.1 51637 g31999 i0 76.5 4.64457831325301 51 12 92.2 0 8 160 231 281 XP_044550623.1 uncharacterized protein C9374_002375 [Naegleria lovaniensis] diamond 771 82.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
30582475 30582475 PRJNA512103_P_NODE_7833_length_461_cov_1.597087_g7424_i0 PRJNA512103 7833 461 1.597087 7.36257107 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 103 2.22e-22   NR YP_007890802.1 221724 g7424 i0 36.9 1.92624728850325 149 92 95.7 1 455 15 425 573 YP_007890802.1 NADH dehydrogenase subunit 5 [Seculamonas ecuadoriensis] diamond 888 103 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;