RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA509429 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27425046 27425046 PRJNA509429_P_NODE_32203_length_213_cov_1.235955_g31375_i0 PRJNA509429 32203 213 1.235955 2.63258415 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 64.3 1.56e-10   NR CDW89587.1 5949 g31375 i0 64 0.704225352112676 50 16 70.4 1 213 64 52 99 CDW89587.1 UNKNOWN [Stylonychia lemnae] diamond 150 64.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32448614 32448614 PRJNA509429_P_NODE_46979_length_161_cov_1.261905_g46151_i0 PRJNA509429 46979 161 1.261905 2.03166705 Tetrahymena utriculariae 2486642 SAR_Eukaryotes SAR_Eukaryotes 56.2 6.97e-8   NR KAL4462271.1 2486642 g46151 i0 59.1 0.819875776397516 44 18 82 0 134 3 68 111 KAL4462271.1 hypothetical protein ABPG72_001064 [Tetrahymena utriculariae] diamond 132 56.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;