RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA509429 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27550930 27550930 PRJNA509429_P_NODE_51464_length_151_cov_0.982759_g50636_i0 PRJNA509429 51464 151 0.982759 1.48396609 Staurois parvus 386267 Chordata Chordata 69.7 2.34e-14   NR CAI9622145.1 386267 g50636 i0 80 0.695364238410596 35 7 69.5 0 1 105 10 44 CAI9622145.1 unnamed protein product [Staurois parvus] diamond 105 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27772342 27772342 PRJNA509429_P_NODE_34864_length_200_cov_3.690909_g34036_i0 PRJNA509429 34864 200 3.690909 7.381818 Engystomops pustulosus 76066 Chordata Chordata 50.1 5.57e-5   NR KAG8571490.1 76066 g34036 i0 62.9 2.595 35 13 52.5 0 2 106 1145 1179 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 519 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28024791 28024791 PRJNA509429_P_NODE_41745_length_175_cov_3.107143_g40917_i0 PRJNA509429 41745 175 3.107143 5.43750025 Bufotes viridis 30338 Chordata Chordata 43.9 0.00587   NR CAK8629749.1 30338 g40917 i0 56.7 0.514285714285714 30 13 51.4 0 37 126 335 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 90 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28213907 28213907 PRJNA509429_P_NODE_29126_length_230_cov_1.384615_g28298_i0 PRJNA509429 29126 230 1.384615 3.1846145 Engystomops pustulosus 76066 Chordata Chordata 63.9 1.08e-9   NR KAG8571490.1 76066 g28298 i0 60 8.29565217391304 65 17 73 1 63 230 1030 1094 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 1908 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29540130 29540130 PRJNA509429_P_NODE_19350_length_308_cov_5.315018_g18522_i0 PRJNA509429 19350 308 5.315018 16.37025544 Engystomops pustulosus 76066 Chordata Chordata 47.4 1.96e-4   NR KAG8536220.1 76066 g18522 i0 67.9 0.818181818181818 28 9 27.3 0 223 306 43 70 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 252 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29982360 29982360 PRJNA509429_P_NODE_34791_length_201_cov_1.096386_g33963_i0 PRJNA509429 34791 201 1.096386 2.20373586 Engystomops pustulosus 76066 Chordata Chordata 40.8 0.0351   NR KAG8571038.1 76066 g33963 i0 69.2 1.16417910447761 26 8 38.8 0 79 2 14 39 KAG8571038.1 hypothetical protein GDO81_011511 [Engystomops pustulosus] diamond 234 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30772416 30772416 PRJNA509429_P_NODE_12334_length_408_cov_2.268097_g11514_i0 PRJNA509429 12334 408 2.268097 9.25383576 Staurois parvus 386267 Chordata Chordata 53.5 4.3e-6   NR CAI9557087.1 386267 g11514 i0 63.9 0.529411764705882 36 11 25 1 258 359 24 59 CAI9557087.1 unnamed protein product, partial [Staurois parvus] diamond 216 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30993497 30993497 PRJNA509429_P_NODE_47454_length_160_cov_0.952000_g46626_i0 PRJNA509429 47454 160 0.952 1.5232 Engystomops pustulosus 76066 Chordata Chordata 52.4 4.78e-7   NR KAG8576659.1 76066 g46626 i0 65 0.75 40 14 75 0 32 151 50 89 KAG8576659.1 hypothetical protein GDO81_009926 [Engystomops pustulosus] diamond 120 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31372936 31372936 PRJNA509429_P_NODE_36876_length_192_cov_2.713376_g36048_i0 PRJNA509429 36876 192 2.713376 5.20968192 Bufotes viridis 30338 Chordata Chordata 44.3 0.00548   NR CAK8629749.1 30338 g36048 i0 52.8 0.5625 36 17 56.3 0 7 114 329 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 108 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31657222 31657222 PRJNA509429_P_NODE_36177_length_195_cov_1.500000_g35349_i0 PRJNA509429 36177 195 1.5 2.925 Branchiostoma lanceolatum 7740 Chordata Chordata 50.4 3.86e-5   NR CAH1271114.1 7740 g35349 i0 59.1 1.35384615384615 44 18 67.7 0 171 40 509 552 CAH1271114.1 Hypp4563 [Branchiostoma lanceolatum] diamond 264 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32637605 32637605 PRJNA509429_P_NODE_38040_length_188_cov_1.254902_g37212_i0 PRJNA509429 38040 188 1.254902 2.35921576 Polypterus senegalus 55291 Chordata Chordata 50.1 4.52e-5   NR KAG2460242.1 55291 g37212 i0 57.4 7.42021276595745 47 20 75 0 171 31 180 226 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 1395 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32858217 32858217 PRJNA509429_P_NODE_22480_length_278_cov_1.197531_g21652_i0 PRJNA509429 22480 278 1.197531 3.32913618 Microcaecilia unicolor 1415580 Chordata Chordata 88.6 4.41e-18   NR XP_030043888.1 1415580 g21652 i0 45.7 3.97122302158273 92 50 99.3 0 3 278 8 99 XP_030043888.1 vomeronasal type-2 receptor 26-like [Microcaecilia unicolor] diamond 1104 88.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;