RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA509429 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29761152 29761152 PRJNA509429_P_NODE_31671_length_215_cov_5.150000_g30843_i0 PRJNA509429 31671 215 5.15 11.0725 Anaerolineae bacterium 2052143 Bacteria Bacteria 40.8 0.047   NR MEZ4667052.1 2052143 g30843 i0 38.3 0.837209302325581 60 36 83.7 1 26 205 34 92 MEZ4667052.1 hypothetical protein [Anaerolineae bacterium] diamond 180 40.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
30866980 30866980 PRJNA509429_P_NODE_31154_length_218_cov_2.000000_g30326_i0 PRJNA509429 31154 218 2 4.36 Chloroflexota bacterium 2026724 Bacteria Bacteria 42 0.045   NR TMD25539.1 2026724 g30326 i0 42.9 0.674311926605505 49 28 67.4 0 185 39 184 232 TMD25539.1 MAG: DUF2029 domain-containing protein [Chloroflexota bacterium] diamond 147 42 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31910472 31910472 PRJNA509429_P_NODE_38897_length_185_cov_1.066667_g38069_i0 PRJNA509429 38897 185 1.066667 1.97333395 Anaerolineae bacterium 2052143 Bacteria Bacteria 60.1 1.16e-8   NR MCL6509819.1 2052143 g38069 i0 71.4 0.681081081081081 42 12 68.1 0 185 60 280 321 MCL6509819.1 P-type conjugative transfer ATPase TrbB [Anaerolineae bacterium] diamond 126 60.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;