RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA509429 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10688978 10688978 PRJNA509429_P_NODE_29869_length_225_cov_3.263158_g29041_i0 PRJNA509429 29869 225 3.263158 7.3421055 Circovirus 39725 Viruses Viruses 62 3.84e-9   NR UJO02094.1 2911953 g29041 i0 60 1.13333333333333 45 18 60 0 91 225 8 52 UJO02094.1 Rep [Molossus molossus associated circovirus 4] diamond 255 62 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae Circovirus Molossus molossus associated circovirus 4
27235176 27235176 PRJNA509429_P_NODE_43603_length_170_cov_1.422222_g42775_i0 PRJNA509429 43603 170 1.422222 2.4177774 Avon-Heathcote Estuary associated circular virus 1 1618232 Viruses Viruses 65.5 8.01e-11   NR YP_009126932.1 1618232 g42775 i0 57.1 0.988235294117647 56 24 98.8 0 1 168 117 172 YP_009126932.1 replication-associated protein [Avon-Heathcote Estuary associated circular virus 1] diamond 168 65.5 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae   Avon-Heathcote Estuary associated circular virus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;