RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA509429 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26824134 26824134 PRJNA509429_P_NODE_28341_length_234_cov_4.653266_g27513_i0 PRJNA509429 28341 234 4.653266 10.88864244 Opitutaceae bacterium 2006848 Bacteria Bacteria 42.4 0.0442   NR HYC71521.1 2006848 g27513 i0 35.8 0.67948717948718 53 29 67.9 1 7 165 13 60 HYC71521.1 prepilin peptidase [Opitutaceae bacterium] diamond 159 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29035300 29035300 PRJNA509429_P_NODE_39288_length_183_cov_2.790541_g38460_i0 PRJNA509429 39288 183 2.790541 5.10669003 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.6 6.72e-4   NR MBV8899070.1 2026799 g38460 i0 44.4 0.737704918032787 45 22 73.8 1 152 18 54 95 MBV8899070.1 L,D-transpeptidase family protein [Verrucomicrobiota bacterium] diamond 135 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31150976 31150976 PRJNA509429_P_NODE_7355_length_537_cov_5.312749_g5835_i1 PRJNA509429 7355 537 5.312749 28.52946213 Planctomycetota bacterium 2026780 Bacteria Bacteria 48.5 0.00351   NR MEM6553720.1 2026780 g5835 i1 36 0.620111731843575 111 51 53.6 5 31 318 59 164 MEM6553720.1 hypothetical protein [Planctomycetota bacterium] diamond 333 48.5 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;