RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA509429" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA509429 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27139997 27139997 PRJNA509429_P_NODE_35982_length_196_cov_1.173913_g35154_i0 PRJNA509429 35982 196 1.173913 2.30086948 Parcubacteria group bacterium 2026774 Bacteria Bacteria 42.4 0.0277   NR MFH1235392.1 2026774 g35154 i0 33.8 0.994897959183674 65 31 88.8 2 181 8 99 158 MFH1235392.1 tetratricopeptide repeat-containing glycosyltransferase family protein [Parcubacteria group bacterium] diamond 195 42.4 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium
27393375 27393375 PRJNA509429_P_NODE_45263_length_165_cov_2.138462_g44435_i0 PRJNA509429 45263 165 2.138462 3.5284623 Candidatus Peregrinibacteria bacterium Greene1 2030811 Bacteria Bacteria 41.2 0.00845   NR TSC99758.1 2017153 g44435 i0 48.9 0.818181818181818 45 23 81.8 0 162 28 23 67 TSC99758.1 MAG: hypothetical protein Greene101449_535 [Candidatus Peregrinibacteria bacterium Greene1014_49] diamond 135 41.2 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium Greene1014_49
29255867 29255867 PRJNA509429_P_NODE_27329_length_241_cov_0.936893_g26501_i0 PRJNA509429 27329 241 0.936893 2.25791213 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 92.8 1.59e-22   NR HRN86952.1 2099670 g26501 i0 91.3 0.572614107883817 46 4 57.3 0 240 103 48 93 HRN86952.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 138 92.8 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;