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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA508758" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 27 ✖

tax_kingdom 1

bioproject 1

  • PRJNA508758 · 27 ✖

analysis 1

  • diamond · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4311845 4311845 PRJNA508758_P_NODE_84484_length_244_cov_0.877193_g83436_i0 PRJNA508758 84484 244 0.877193 2.14035092 Solirubrobacter sp. 1932788 Bacteria Bacteria 120 1.1499999999999999e-32   NR HEX6024707.1 1932788 g83436 i0 86.8 1.67213114754098 68 9 83.6 0 40 243 1 68 HEX6024707.1 gamma carbonic anhydrase family protein [Solirubrobacter sp.] diamond 408 120 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Solirubrobacter sp.
18336501 18336501 PRJNA508758_P_NODE_71515_length_255_cov_1.395604_g70467_i0 PRJNA508758 71515 255 1.395604 3.5587902 Agrococcus 46352 Bacteria Bacteria 125 7.27e-34   NR WP_146794961.1 153730 g70467 i0 76.5 3 85 20 100 0 255 1 33 117 WP_146794961.1 hypothetical protein [Agrococcus baldri] diamond 765 125 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus baldri
19610879 19610879 PRJNA508758_P_NODE_78016_length_248_cov_0.880000_g76968_i0 PRJNA508758 78016 248 0.88 2.1824 Microbacterium sp. SLBN-146 2768457 Bacteria Bacteria 110 4.51e-27   NR WP_141930949.1 2768457 g76968 i0 95.2 1.5 62 3 75 0 61 246 1 62 WP_141930949.1 ketose-bisphosphate aldolase [Microbacterium sp. SLBN-146] diamond 372 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. SLBN-146
20886832 20886832 PRJNA508758_P_NODE_61957_length_274_cov_1.024876_g60909_i0 PRJNA508758 61957 274 1.024876 2.80816024 Parenemella sanctibonifatiensis 2016505 Bacteria Bacteria 186 5.559999999999999e-54   NR WP_229116579.1 2016505 g60909 i0 97.8 0.985401459854015 90 2 98.5 0 3 272 170 259 WP_229116579.1 AMP-dependent synthetase/ligase [Parenemella sanctibonifatiensis] diamond 270 186 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Parenemella Parenemella sanctibonifatiensis
27250556 27250556 PRJNA508758_P_NODE_5843_length_990_cov_2.750273_g5088_i0 PRJNA508758 5843 990 2.750273 27.2277027 FCB group 1783270 Bacteria Bacteria 129 3.18e-33   NR MCA1715340.1 2900548 g5088 i0 47.3 5.77272727272727 131 64 39.7 2 541 933 1 126 MCA1715340.1 Mth938-like domain-containing protein [Actinomycetota bacterium] diamond 5715 130 0.992307692307692 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27519487 27519487 PRJNA508758_P_NODE_12283_length_598_cov_3.489524_g11281_i0 PRJNA508758 12283 598 3.489524 20.86735352 Trebonia sp. 2767075 Bacteria Bacteria 46.6 0.0384   NR HVT68871.1 2767075 g11281 i0 38 0.3561872909699 71 44 35.6 0 368 156 528 598 HVT68871.1 xanthine dehydrogenase family protein molybdopterin-binding subunit [Trebonia sp.] diamond 213 46.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Treboniaceae Trebonia Trebonia sp.
27803821 27803821 PRJNA508758_P_NODE_80164_length_247_cov_0.885057_g79116_i0 PRJNA508758 80164 247 0.885057 2.18609079 Herbihabitans rhizosphaerae 1872711 Bacteria Bacteria 43.5 0.0205   NR WP_130346325.1 1872711 g79116 i0 35.2 0.862348178137652 71 40 82.6 2 224 21 406 473 WP_130346325.1 ArnT family glycosyltransferase [Herbihabitans rhizosphaerae] diamond 213 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Herbihabitans Herbihabitans rhizosphaerae
28450746 28450746 PRJNA508758_P_NODE_47726_length_306_cov_1.321888_g46678_i0 PRJNA508758 47726 306 1.321888 4.04497728 Bacteria 2 Bacteria Bacteria 47 5.38e-4   NR WP_344745140.1 46190 g46678 i0 38.2 2.69607843137255 55 34 53.9 0 244 80 24 78 WP_344745140.1 AMP-binding enzyme [Streptosporangium vulgare] diamond 825 47.4 0.991561181434599 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium vulgare
28940561 28940561 PRJNA508758_P_NODE_77328_length_249_cov_0.875000_g76280_i0 PRJNA508758 77328 249 0.875 2.17875 Leifsonia shinshuensis 150026 Bacteria Bacteria 150 1.15e-41   NR WP_241701912.1 150026 g76280 i0 93.9 0.987951807228916 82 5 98.8 0 2 247 74 155 WP_241701912.1 DUF58 domain-containing protein [Leifsonia shinshuensis] diamond 246 150 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia shinshuensis
29129978 29129978 PRJNA508758_P_NODE_25949_length_395_cov_1.475155_g24901_i0 PRJNA508758 25949 395 1.475155 5.82686225 Rubrobacteraceae bacterium 2740537 Bacteria Bacteria 45.1 0.0299   NR HEY6674089.1 2740537 g24901 i0 31 0.881012658227848 116 66 85.8 6 4 342 16 120 HEY6674089.1 glutamate synthase large subunit [Rubrobacteraceae bacterium] diamond 348 45.1 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   Rubrobacteraceae bacterium
29130012 29130012 PRJNA508758_P_NODE_78389_length_248_cov_0.880000_g77341_i0 PRJNA508758 78389 248 0.88 2.1824 Actinomyces sp. ICM47 936548 Bacteria Bacteria 144 2.32e-38   NR WP_083836264.1 936548 g77341 i0 93.9 0.991935483870968 82 5 99.2 0 247 2 342 423 WP_083836264.1 exonuclease domain-containing protein [Actinomyces sp. ICM47] diamond 246 144 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM47
29193080 29193080 PRJNA508758_P_NODE_4289_length_1195_cov_4.729055_g3744_i0 PRJNA508758 4289 1195 4.729055 56.51220725 Saccharopolyspora flava 95161 Bacteria Bacteria 50.1 0.0125   NR WP_093418561.1 95161 g3744 i0 44.3 0.198326359832636 79 41 19.3 2 825 595 20 97 WP_093418561.1 LLM class flavin-dependent oxidoreductase [Saccharopolyspora flava] diamond 237 50.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora flava
29476799 29476799 PRJNA508758_P_NODE_79410_length_247_cov_0.885057_g78362_i0 PRJNA508758 79410 247 0.885057 2.18609079 Corynebacterium meitnerae 2913498 Bacteria Bacteria 152 4.11e-42   NR WP_269964772.1 2913498 g78362 i0 100 0.995951417004049 82 0 99.6 0 1 246 233 314 WP_269964772.1 ammonium transporter [Corynebacterium meitnerae] diamond 246 152 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium meitnerae
29666149 29666149 PRJNA508758_P_NODE_33310_length_355_cov_1.024823_g32262_i0 PRJNA508758 33310 355 1.024823 3.63812165 unclassified Streptomyces 2593676 Bacteria Bacteria 45.8 0.00967   NR WP_329921045.1 2593676 g32262 i0 34.7 0.853521126760563 101 58 82.8 4 44 337 60 155 WP_329921045.1 MULTISPECIES: N-acetylglucosamine kinase [unclassified Streptomyces] diamond 303 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
29887693 29887693 PRJNA508758_P_NODE_2851_length_1516_cov_2.811504_g2473_i0 PRJNA508758 2851 1516 2.811504 42.62240064 Micrococcus luteus 1270 Bacteria Bacteria 67.8 8.8e-10   NR WP_216882726.1 1270 g2473 i0 31.8 0.338390501319261 110 72 21.8 1 831 1160 7 113 WP_216882726.1 hypothetical protein [Micrococcus luteus] diamond 513 67.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
29903142 29903142 PRJNA508758_P_NODE_74031_length_251_cov_0.865169_g72983_i0 PRJNA508758 74031 251 0.865169 2.17157419 Actinomycetota 201174 Bacteria Bacteria 41.6 0.0188   NR WP_310049504.1 1356565 g72983 i0 41.2 1.92430278884462 51 30 61 0 54 206 23 73 WP_310049504.1 PLD nuclease N-terminal domain-containing protein [Arthrobacter ginsengisoli] diamond 483 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter ginsengisoli
29919333 29919333 PRJNA508758_P_NODE_84811_length_243_cov_1.570588_g83763_i0 PRJNA508758 84811 243 1.570588 3.81652884 Nonomuraea rubra 46180 Bacteria Bacteria 43.9 0.0139   NR WP_379491580.1 46180 g83763 i0 35.8 0.827160493827161 67 33 82.7 2 230 30 325 381 WP_379491580.1 alpha/beta hydrolase family protein [Nonomuraea rubra] diamond 201 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea rubra
29982328 29982328 PRJNA508758_P_NODE_36751_length_340_cov_2.550562_g35703_i0 PRJNA508758 36751 340 2.550562 8.6719108 Nocardioides sp. 35761 Bacteria Bacteria 43.5 0.0304   NR MEZ5192790.1 35761 g35703 i0 47.7 0.388235294117647 44 23 38.8 0 196 65 65 108 MEZ5192790.1 hypothetical protein [Nocardioides sp.] diamond 132 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
30014054 30014054 PRJNA508758_P_NODE_71031_length_256_cov_1.278689_g69983_i0 PRJNA508758 71031 256 1.278689 3.27344384 Kitasatospora griseola 2064 Bacteria Bacteria 41.2 0.0322   NR WP_380333499.1 2064 g69983 i0 55.9 0.3984375 34 14 38.7 1 117 215 50 83 WP_380333499.1 hypothetical protein [Kitasatospora griseola] diamond 102 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora griseola
30076995 30076995 PRJNA508758_P_NODE_84052_length_244_cov_0.900585_g83004_i0 PRJNA508758 84052 244 0.900585 2.1974274 Actinomycetota bacterium 2900548 Bacteria Bacteria 125 9.469999999999999e-32   NR MDQ3965353.1 2900548 g83004 i0 80.2 0.995901639344262 81 16 99.6 0 243 1 203 283 MDQ3965353.1 PAS domain S-box protein [Actinomycetota bacterium] diamond 243 125 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30645645 30645645 PRJNA508758_P_NODE_68133_length_262_cov_0.984127_g67085_i0 PRJNA508758 68133 262 0.984127 2.57841274 Micromonospora auratinigra 261654 Bacteria Bacteria 43.9 0.018   NR WP_091658452.1 261654 g67085 i0 35.3 0.778625954198473 68 34 66.4 2 59 232 321 388 WP_091658452.1 D-alanyl-D-alanine carboxypeptidase family protein [Micromonospora auratinigra] diamond 204 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora auratinigra
30803826 30803826 PRJNA508758_P_NODE_80554_length_246_cov_1.520231_g79506_i0 PRJNA508758 80554 246 1.520231 3.73976826 Streptomyces sp. 2321.6 1938840 Bacteria Bacteria 42.4 0.046   NR PBC87039.1 1938840 g79506 i0 39.7 0.829268292682927 68 37 79.3 2 48 242 30 96 PBC87039.1 hypothetical protein BX261_7173 [Streptomyces sp. 2321.6] diamond 204 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2321.6
31134884 31134884 PRJNA508758_P_NODE_82295_length_245_cov_0.895349_g81247_i0 PRJNA508758 82295 245 0.895349 2.19360505 Rothia 32207 Bacteria Bacteria 155 9.02e-43   NR WP_346924112.1 1885016 g81247 i0 100 1.98367346938776 81 0 99.2 0 244 2 251 331 WP_346924112.1 oligosaccharide flippase family protein [Rothia sp. (in: high G+C Gram-positive bacteria)] diamond 486 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. (in: high G+C Gram-positive bacteria)
31688949 31688949 PRJNA508758_P_NODE_76057_length_250_cov_0.870056_g75009_i0 PRJNA508758 76057 250 0.870056 2.17514 Microbacterium sp. JZ31 1906274 Bacteria Bacteria 44.7 0.00866   NR WP_238439419.1 1906274 g75009 i0 36.5 0.756 63 40 75.6 0 34 222 412 474 WP_238439419.1 glycoside hydrolase family 65 protein [Microbacterium sp. JZ31] diamond 189 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. JZ31
31783769 31783769 PRJNA508758_P_NODE_83677_length_244_cov_0.900585_g82629_i0 PRJNA508758 83677 244 0.900585 2.1974274 Streptomyces sp. NBC_ 1931 Bacteria Bacteria 43.9 0.0133   NR WP_323179198.1 2975635 g82629 i0 39.1 0.848360655737705 69 35 84.8 3 12 218 62 123 WP_323179198.1 protein kinase domain-containing protein [Streptomyces sp. NBC_00059] diamond 207 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_00059
31847080 31847080 PRJNA508758_P_NODE_8097_length_788_cov_8.637762_g7191_i0 PRJNA508758 8097 788 8.637762 68.06556456 Actinacidiphila soli 2487275 Bacteria Bacteria 48.1 0.0232   NR WP_127360606.1 2487275 g7191 i0 29.6 0.373096446700508 98 63 36.5 2 750 463 225 318 WP_127360606.1 O-antigen ligase family protein [Actinacidiphila soli] diamond 294 48.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila soli
32416819 32416819 PRJNA508758_P_NODE_52739_length_293_cov_1.400000_g51691_i0 PRJNA508758 52739 293 1.4 4.102 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.9 0.0244   NR MDP9262338.1 2900548 g51691 i0 36.4 0.675767918088737 66 37 62.5 1 110 292 81 146 MDP9262338.1 beta-eliminating lyase-related protein [Actinomycetota bacterium] diamond 198 43.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;