RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA508758" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA508758 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18336125 18336125 PRJNA508758_P_NODE_22935_length_419_cov_2.627168_g21887_i0 PRJNA508758 22935 419 2.627168 11.00783392 Acidobacteriota bacterium 1978231 Bacteria Bacteria 149 1.25e-41   NR HIN12555.1 1978231 g21887 i0 72.6 8.17661097852029 95 26 68 0 418 134 152 246 HIN12555.1 type I methionyl aminopeptidase [Acidobacteriota bacterium] diamond 3426 149 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28940528 28940528 PRJNA508758_P_NODE_27028_length_388_cov_1.311111_g25980_i0 PRJNA508758 27028 388 1.311111 5.08711068 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 74.7 1.15e-12   NR MCW5977425.1 2212468 g25980 i0 34.3 3.14690721649485 108 70 83.5 1 3 326 125 231 MCW5977425.1 hypothetical protein [Bryobacteraceae bacterium] diamond 1221 74.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32480161 32480161 PRJNA508758_P_NODE_46919_length_308_cov_1.638298_g45871_i0 PRJNA508758 46919 308 1.638298 5.04595784 Pseudacidobacterium ailaaui 1382359 Bacteria Bacteria 58.9 1.61e-7   NR MBX6361891.1 1382359 g45871 i0 47.8 0.652597402597403 67 34 65.3 1 3 203 31 96 MBX6361891.1 hypothetical protein [Pseudacidobacterium ailaaui] diamond 201 58.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Pseudacidobacterium Pseudacidobacterium ailaaui

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;