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contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA505329" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA505329 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26633873 26633873 PRJNA505329_P_NODE_30121_length_187_cov_1.500000_g29650_i0 PRJNA505329 30121 187 1.5 2.805 Haloferula sp. 2497595 Bacteria Bacteria 72.4 5.87e-13   NR MEP4079701.1 2497595 g29650 i0 50 2.80748663101604 60 30 96.3 0 4 183 45 104 MEP4079701.1 alpha/beta hydrolase [Haloferula sp.] diamond 525 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula sp.
27266773 27266773 PRJNA505329_P_NODE_34163_length_181_cov_1.553030_g33692_i0 PRJNA505329 34163 181 1.55303 2.8109843 Luteolibacter soli 3135280 Bacteria Bacteria 92.8 3.64e-20   NR WP_341403761.1 3135280 g33692 i0 86.8 0.878453038674033 53 7 87.8 0 18 176 13 65 WP_341403761.1 PQQ-dependent sugar dehydrogenase [Luteolibacter soli] diamond 159 92.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter soli
27929927 27929927 PRJNA505329_P_NODE_47405_length_164_cov_1.782609_g46934_i0 PRJNA505329 47405 164 1.782609 2.92347876 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 89.7 2.68e-20   NR MES2308695.1 2026799 g46934 i0 81.1 0.969512195121951 53 10 97 0 4 162 47 99 MES2308695.1 phosphoadenylyl-sulfate reductase [Verrucomicrobiota bacterium] diamond 159 89.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28466820 28466820 PRJNA505329_P_NODE_50306_length_161_cov_3.651786_g49835_i0 PRJNA505329 50306 161 3.651786 5.87937546 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 90.1 2.48e-19   NR HOW63730.1 2026799 g49835 i0 84.3 0.950310559006211 51 8 95 0 156 4 1152 1202 HOW63730.1 N-6 DNA methylase [Verrucomicrobiota bacterium] diamond 153 90.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28877085 28877085 PRJNA505329_P_NODE_42828_length_168_cov_1.739496_g42357_i0 PRJNA505329 42828 168 1.739496 2.92235328 Luteolibacter arcticus 1581411 Bacteria Bacteria 88.2 1.21e-18   NR WP_264487087.1 1581411 g42357 i0 74.5 0.982142857142857 55 14 98.2 0 167 3 157 211 WP_264487087.1 hypothetical protein [Luteolibacter arcticus] diamond 165 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter arcticus
29350818 29350818 PRJNA505329_P_NODE_34769_length_180_cov_1.572519_g34298_i0 PRJNA505329 34769 180 1.572519 2.8305341999999998 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 115 9.579999999999999e-30   NR RYD20321.1 2026800 g34298 i0 96.5 0.95 57 2 95 0 178 8 193 249 RYD20321.1 MAG: hypothetical protein EOP88_15530 [Verrucomicrobiaceae bacterium] diamond 171 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29366257 29366257 PRJNA505329_P_NODE_50089_length_162_cov_0.920354_g49618_i0 PRJNA505329 50089 162 0.920354 1.49097348 Pedosphaera 1032526 Bacteria Bacteria 64.7 1.11e-10   NR MSU84092.1 2024890 g49618 i0 79.1 4.51851851851852 43 7 75.9 1 123 1 148 190 MSU84092.1 exopolysaccharide biosynthesis protein [Pedosphaera sp.] diamond 732 65.1 0.993855606758833 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
29618410 29618410 PRJNA505329_P_NODE_50690_length_160_cov_2.738739_g50219_i0 PRJNA505329 50690 160 2.738739 4.3819824 Luteolibacter 518753 Bacteria Bacteria 108 8.17e-29   NR WP_200351539.1 1144680 g50219 i0 92.3 2.925 52 4 97.5 0 159 4 61 112 WP_200351539.1 Fur family transcriptional regulator [Luteolibacter yonseiensis] diamond 468 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter yonseiensis
29634506 29634506 PRJNA505329_P_NODE_12890_length_233_cov_3.048913_g12419_i0 PRJNA505329 12890 233 3.048913 7.10396729 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 66.6 7.72e-11   NR MBM3839945.1 2026799 g12419 i0 93.8 0.412017167381974 32 2 41.2 0 135 230 194 225 MBM3839945.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 96 66.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29666112 29666112 PRJNA505329_P_NODE_30470_length_186_cov_3.197080_g29999_i0 PRJNA505329 30470 186 3.19708 5.9465688 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 99 3.639999999999999e-23   NR MCX6958484.1 2499141 g29999 i0 90 1.93548387096774 60 6 96.8 0 5 184 172 231 MCX6958484.1 IS256 family transposase [Verrucomicrobiia bacterium] diamond 360 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30108613 30108613 PRJNA505329_P_NODE_23992_length_197_cov_3.189189_g23521_i0 PRJNA505329 23992 197 3.189189 6.28270233 Verrucomicrobiota bacterium JB024 3064553 Bacteria Bacteria 101 4.15e-25   NR MDP0495863.1 3064553 g23521 i0 100 0.791878172588833 52 0 79.2 0 5 160 143 194 MDP0495863.1 hypothetical protein [Verrucomicrobiota bacterium JB024] diamond 156 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium JB024
30330333 30330333 PRJNA505329_P_NODE_42892_length_168_cov_1.731092_g42421_i0 PRJNA505329 42892 168 1.731092 2.90823456 Luteolibacter sp. 1962973 Bacteria Bacteria 96.7 1.3400000000000002e-21   NR WP_348216044.1 1962973 g42421 i0 70.9 1.96428571428571 55 16 98.2 0 2 166 424 478 WP_348216044.1 polysaccharide lyase family protein [Luteolibacter sp.] diamond 330 96.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
30582398 30582398 PRJNA505329_P_NODE_23253_length_198_cov_4.798658_g22782_i0 PRJNA505329 23253 198 4.798658 9.50134284 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 86.3 8.44e-18   NR WP_184340962.1 48466 g22782 i0 52.7 2.75757575757576 91 15 95.5 1 8 196 86 176 WP_184340962.1 DNA polymerase III subunit beta [Prosthecobacter vanneervenii] diamond 546 86.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
30772341 30772341 PRJNA505329_P_NODE_25834_length_193_cov_2.715278_g25363_i0 PRJNA505329 25834 193 2.715278 5.24048654 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0128   NR MES2568622.1 2026799 g25363 i0 48.1 0.839378238341969 54 28 83.9 0 28 189 20 73 MES2568622.1 LamG domain-containing protein [Verrucomicrobiota bacterium] diamond 162 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31182618 31182618 PRJNA505329_P_NODE_37375_length_176_cov_1.614173_g36904_i0 PRJNA505329 37375 176 1.614173 2.84094448 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 77 1.23e-14   NR HEY5954088.1 2832348 g36904 i0 68.4 0.971590909090909 57 18 97.2 0 4 174 181 237 HEY5954088.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 171 77 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
31182621 31182621 PRJNA505329_P_NODE_45435_length_166_cov_0.888889_g44964_i0 PRJNA505329 45435 166 0.888889 1.47555574 Luteolibacter sp. SL25 1962973 Bacteria Bacteria 95.9 2.07e-23   NR WP_267670013.1 2995170 g44964 i0 77.8 7.80722891566265 54 12 97.6 0 162 1 3 56 WP_267670013.1 DUF6428 family protein [Luteolibacter sp. SL250] diamond 1296 95.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
31973666 31973666 PRJNA505329_P_NODE_41578_length_169_cov_2.558333_g41107_i0 PRJNA505329 41578 169 2.558333 4.32358277 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 67.4 2.58e-11   NR HUR41170.1 2499141 g41107 i0 60 0.887573964497041 50 20 88.8 0 17 166 302 351 HUR41170.1 aminotransferase class V-fold PLP-dependent enzyme [Verrucomicrobiia bacterium] diamond 150 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32353647 32353647 PRJNA505329_P_NODE_46099_length_165_cov_1.784483_g45628_i0 PRJNA505329 46099 165 1.784483 2.94439695 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 123 9.55e-33   NR MEI6248025.1 2026799 g45628 i0 96.3 2.94545454545455 54 2 98.2 0 4 165 104 157 MEI6248025.1 DUF1080 domain-containing protein [Verrucomicrobiota bacterium] diamond 486 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32606290 32606290 PRJNA505329_P_NODE_34420_length_180_cov_3.122137_g33949_i0 PRJNA505329 34420 180 3.122137 5.6198466 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 115 1.72e-30   NR MCX6973608.1 2026799 g33949 i0 96.5 1.9 57 2 95 0 5 175 77 133 MCX6973608.1 phosphatase PAP2 family protein [Verrucomicrobiota bacterium] diamond 342 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32637540 32637540 PRJNA505329_P_NODE_52120_length_154_cov_2.923810_g51649_i0 PRJNA505329 52120 154 2.92381 4.5026674 Opitutaceae bacterium 2006848 Bacteria Bacteria 62 1.32e-9   NR MEO5959580.1 2006848 g51649 i0 56.3 3.75974025974026 48 21 93.5 0 149 6 84 131 MEO5959580.1 DUF72 domain-containing protein [Opitutaceae bacterium] diamond 579 62 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;