RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA505329" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA505329 · 28 ✖

analysis 1

  • diamond · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17060808 17060808 PRJNA505329_P_NODE_38554_length_174_cov_1.656000_g38083_i0 PRJNA505329 38554 174 1.656 2.88144 Bdellovibrio sp. CG1 28201 Bacteria Bacteria 92 1.28e-20   NR PIS11319.1 1975526 g38083 i0 86 1.96551724137931 57 8 98.3 0 173 3 196 252 PIS11319.1 MAG: pilus assembly protein TadC [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8] diamond 342 92 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8
23435959 23435959 PRJNA505329_P_NODE_43059_length_168_cov_1.571429_g42588_i0 PRJNA505329 43059 168 1.571429 2.64000072 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 118 1.72e-29   NR WP_041874753.1 1569284 g42588 i0 98.2 0.982142857142857 55 1 98.2 0 166 2 178 232 WP_041874753.1 hypothetical protein [Bdellovibrio sp. ArHS] diamond 165 118 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
27550864 27550864 PRJNA505329_P_NODE_38884_length_173_cov_3.653226_g38413_i0 PRJNA505329 38884 173 3.653226 6.32008098 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 59.3 7.33e-10   NR MEK7356775.1 3034175 g38413 i0 49.1 0.953757225433526 55 28 95.4 0 8 172 17 71 MEK7356775.1 hypothetical protein [Bdellovibrionota bacterium] diamond 165 59.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27550867 27550867 PRJNA505329_P_NODE_51464_length_157_cov_2.657407_g50993_i0 PRJNA505329 51464 157 2.657407 4.17212899 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 97.4 5.39e-22   NR WP_295905846.1 239744 g50993 i0 98 1.94904458598726 51 1 97.5 0 154 2 366 416 WP_295905846.1 microtubule-binding protein, partial [uncultured Bdellovibrio sp.] diamond 306 97.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
27629820 27629820 PRJNA505329_P_NODE_42264_length_169_cov_0.866667_g41793_i0 PRJNA505329 42264 169 0.866667 1.46466723 Micavibrio 213485 Bacteria Bacteria 51.6 1.01e-5   NR PZQ47429.1 349221 g41793 i0 100 1.66863905325444 23 0 40.8 0 72 4 44 66 PZQ47429.1 MAG: phosphoribosylformylglycinamidine cyclo-ligase [Micavibrio aeruginosavorus] diamond 282 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27677631 27677631 PRJNA505329_P_NODE_51624_length_156_cov_2.869159_g51153_i0 PRJNA505329 51624 156 2.869159 4.47588804 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 66.6 4.02e-11   NR HUP56349.1 3034175 g51153 i0 56.9 0.980769230769231 51 22 98.1 0 156 4 142 192 HUP56349.1 small ribosomal subunit Rsm22 family protein [Bdellovibrionota bacterium] diamond 153 66.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27740789 27740789 PRJNA505329_P_NODE_23224_length_198_cov_5.241611_g22753_i0 PRJNA505329 23224 198 5.241611 10.37838978 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 46.2 0.00116   NR MAV91817.1 2026715 g22753 i0 61.3 0.46969696969697 31 12 47 0 101 193 22 52 MAV91817.1 phosphatidate cytidylyltransferase [Pseudobdellovibrionaceae bacterium] diamond 93 46.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27866648 27866648 PRJNA505329_P_NODE_50385_length_161_cov_2.741071_g49914_i0 PRJNA505329 50385 161 2.741071 4.41312431 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 49.3 1.57e-5   NR MFP5386810.1 3058048 g49914 i0 46.5 1.77018633540373 43 22 80.1 1 130 2 5 46 MFP5386810.1 hypothetical protein [Bacteriovoracia bacterium] diamond 285 49.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
27882179 27882179 PRJNA505329_P_NODE_44845_length_166_cov_2.632479_g44374_i0 PRJNA505329 44845 166 2.632479 4.36991514 Pseudomonadati 3379134 Bacteria Bacteria 61.6 1.53e-9   NR WP_243537810.1 2835041 g44374 i0 50 3.93975903614458 54 27 97.6 0 3 164 132 185 WP_243537810.1 SDR family NAD(P)-dependent oxidoreductase [Bdellovibrio reynosensis] diamond 654 62 0.993548387096774 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio reynosensis
28656207 28656207 PRJNA505329_P_NODE_13727_length_233_cov_2.777174_g13256_i0 PRJNA505329 13727 233 2.777174 6.47081542 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 117 7.19e-32   NR WP_041874989.1 1569284 g13256 i0 71.9 1.14592274678112 89 12 97.9 1 230 3 26 114 WP_041874989.1 hypothetical protein [Bdellovibrio sp. ArHS] diamond 267 117 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
29003903 29003903 PRJNA505329_P_NODE_38528_length_174_cov_2.000000_g38057_i0 PRJNA505329 38528 174 2 3.48 Peredibacter starrii 28202 Bacteria Bacteria 117 5.53e-29   NR WP_321392548.1 28202 g38057 i0 89.3 0.96551724137931 56 6 96.6 0 6 173 116 171 WP_321392548.1 CHASE domain-containing protein [Peredibacter starrii] diamond 168 117 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
29035230 29035230 PRJNA505329_P_NODE_9728_length_234_cov_3.232432_g9257_i0 PRJNA505329 9728 234 3.232432 7.56389088 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 68.2 3.54e-11   NR PZO86953.1 349221 g9257 i0 87.9 0.423076923076923 33 4 42.3 0 99 1 291 323 PZO86953.1 MAG: ammonia channel protein [Micavibrio aeruginosavorus] diamond 99 68.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29224725 29224725 PRJNA505329_P_NODE_49949_length_162_cov_0.920354_g49478_i0 PRJNA505329 49949 162 0.920354 1.49097348 Bacteriovorax antarcticus 3088717 Bacteria Bacteria 72.4 3.05e-13   NR WP_323575740.1 3088717 g49478 i0 71.2 0.962962962962963 52 15 96.3 0 5 160 208 259 WP_323575740.1 VOC family protein [Bacteriovorax antarcticus] diamond 156 72.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax antarcticus
29540067 29540067 PRJNA505329_P_NODE_41150_length_170_cov_1.694215_g40679_i0 PRJNA505329 41150 170 1.694215 2.8801655 Bacteriovorax stolpii 960 Bacteria Bacteria 95.1 4.290000000000001e-21   NR WP_158649653.1 960 g40679 i0 90.6 0.935294117647059 53 5 93.5 0 166 8 181 233 WP_158649653.1 hydroxymethylbilane synthase [Bacteriovorax stolpii] diamond 159 95.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30298706 30298706 PRJNA505329_P_NODE_20972_length_201_cov_3.348684_g20501_i0 PRJNA505329 20972 201 3.348684 6.73085484 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 67.4 4.21e-11   NR WP_041876123.1 1569284 g20501 i0 100 0.492537313432836 33 0 49.3 0 198 100 85 117 WP_041876123.1 phosphoribosylamine--glycine ligase [Bdellovibrio sp. ArHS] diamond 99 67.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
30298710 30298710 PRJNA505329_P_NODE_35852_length_178_cov_2.379845_g35381_i0 PRJNA505329 35852 178 2.379845 4.2361241 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 121 5.72e-31   NR WP_409478291.1 3386277 g35381 i0 96.6 1.98876404494382 59 2 99.4 0 178 2 210 268 WP_409478291.1 LysM peptidoglycan-binding domain-containing protein [Pseudobdellovibrio sp. HCB154] diamond 354 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
30740546 30740546 PRJNA505329_P_NODE_44294_length_167_cov_0.881356_g43823_i0 PRJNA505329 44294 167 0.881356 1.47186452 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 65.5 4.78e-11   NR MBA2405741.1 2053517 g43823 i0 82.9 1.27544910179641 35 6 62.9 0 108 4 1 35 MBA2405741.1 acireductone synthase [Bdellovibrionales bacterium] diamond 213 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30866902 30866902 PRJNA505329_P_NODE_20074_length_201_cov_4.013158_g19603_i0 PRJNA505329 20074 201 4.013158 8.06644758 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 57.4 8.72e-8   NR MBX3040467.1 2026715 g19603 i0 32.5 1.70149253731343 114 29 98.5 2 198 1 43 156 MBX3040467.1 polyphenol oxidase family protein [Pseudobdellovibrionaceae bacterium] diamond 342 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30898698 30898698 PRJNA505329_P_NODE_11854_length_233_cov_3.320652_g11383_i0 PRJNA505329 11854 233 3.320652 7.73711916 Bdellovibrio 958 Bacteria Bacteria 70.5 4.47e-12   NR WP_374078495.1 958 g11383 i0 93.9 0.424892703862661 33 2 42.5 0 232 134 262 294 WP_374078495.1 MULTISPECIES: phosphatase domain-containing protein [Bdellovibrio] diamond 99 70.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
31246132 31246132 PRJNA505329_P_NODE_21255_length_201_cov_3.236842_g20784_i0 PRJNA505329 21255 201 3.236842 6.50605242 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 49.7 7.61e-5   NR PZO83180.1 349221 g20784 i0 68.8 0.970149253731343 32 10 47.8 0 104 199 118 149 PZO83180.1 MAG: hypothetical protein DI626_09275 [Micavibrio aeruginosavorus] diamond 195 49.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
31324790 31324790 PRJNA505329_P_NODE_24935_length_194_cov_3.731034_g24464_i0 PRJNA505329 24935 194 3.731034 7.23820596 Pseudomonadati 3379134 Bacteria Bacteria 100 1.37e-25   NR PZP56326.1 349221 g24464 i0 77 3.81958762886598 61 14 94.3 0 184 2 1 61 PZP56326.1 MAG: ribonuclease D, partial [Micavibrio aeruginosavorus] diamond 741 101 0.99009900990099 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
31594285 31594285 PRJNA505329_P_NODE_15216_length_233_cov_2.652174_g14745_i0 PRJNA505329 15216 233 2.652174 6.17956542 Oligoflexia bacterium 2599941 Bacteria Bacteria 55.5 1.06e-6   NR MDR3607027.1 2599941 g14745 i0 75.8 0.424892703862661 33 8 42.5 0 3 101 439 471 MDR3607027.1 apolipoprotein N-acyltransferase [Oligoflexia bacterium] diamond 99 55.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
31941849 31941849 PRJNA505329_P_NODE_52057_length_154_cov_3.238095_g51586_i0 PRJNA505329 52057 154 3.238095 4.9866663 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 45.4 0.00126   NR MFL5814659.1 3034169 g51586 i0 63.4 0.798701298701299 41 15 79.9 0 133 11 43 83 MFL5814659.1 beta strand repeat-containing protein [Bdellovibrionia bacterium] diamond 123 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
32163683 32163683 PRJNA505329_P_NODE_10338_length_233_cov_4.260870_g9867_i0 PRJNA505329 10338 233 4.26087 9.9278271 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 55.5 1.08e-6   NR MBX3034454.1 2026715 g9867 i0 81.8 0.424892703862661 33 6 42.5 0 135 233 53 85 MBX3034454.1 RNA-binding transcriptional accessory protein [Pseudobdellovibrionaceae bacterium] diamond 99 55.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32226968 32226968 PRJNA505329_P_NODE_40998_length_170_cov_2.487603_g40527_i0 PRJNA505329 40998 170 2.487603 4.2289251 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 93.2 2.34e-20   NR MBX2987785.1 2026715 g40527 i0 90.9 0.970588235294118 55 5 97.1 0 3 167 671 725 MBX2987785.1 cadmium-translocating P-type ATPase [Pseudobdellovibrionaceae bacterium] diamond 165 93.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32290455 32290455 PRJNA505329_P_NODE_19419_length_201_cov_6.026316_g18948_i0 PRJNA505329 19419 201 6.026316 12.11289516 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 129 5.77e-34   NR WP_291515392.1 1569284 g18948 i0 95.7 1.02985074626866 69 0 98.5 1 199 2 109 177 WP_291515392.1 alpha/beta fold hydrolase [Bdellovibrio sp. ArHS] diamond 207 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
32511891 32511891 PRJNA505329_P_NODE_27119_length_191_cov_2.542254_g26648_i0 PRJNA505329 27119 191 2.542254 4.85570514 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 61.6 3.85e-9   NR MBK8204966.1 2053517 g26648 i0 50 0.910994764397906 58 29 91.1 0 7 180 267 324 MBK8204966.1 hypothetical protein [Bdellovibrionales bacterium] diamond 174 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32826748 32826748 PRJNA505329_P_NODE_15160_length_233_cov_2.663043_g14689_i0 PRJNA505329 15160 233 2.663043 6.20489019 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 62.4 8.58e-10   NR MES2526958.1 3034175 g14689 i0 60 0.643776824034335 50 18 64.4 1 4 153 132 179 MES2526958.1 hypothetical protein [Bdellovibrionota bacterium] diamond 150 62.4 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;