RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA505329" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA505329 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28087667 28087667 PRJNA505329_P_NODE_7065_length_276_cov_2.251101_g6594_i0 PRJNA505329 7065 276 2.251101 6.21303876 Methanobacterium sp. 2164 Archaea Archaea 116 5.569999999999999e-28   NR MEN6293712.1 2164 g6594 i0 65.1 1.83695652173913 86 25 88 2 4 246 123 208 MEN6293712.1 portal protein [Methanobacterium sp.] diamond 507 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
31056891 31056891 PRJNA505329_P_NODE_48275_length_163_cov_2.333333_g47804_i0 PRJNA505329 48275 163 2.333333 3.80333279 Methanocaldococcus jannaschii 2190 Archaea Archaea 97.8 1.18e-24   NR 2J9D_E 2190 g47804 i0 94.1 0.938650306748466 51 3 93.9 0 10 162 56 106 2J9D_E Chain E, HYPOTHETICAL NITROGEN REGULATORY PII-LIKE PROTEIN MJ0059 [Methanocaldococcus jannaschii] diamond 153 97.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;