RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA498309" and tax_phylum = "Candidatus Deferrimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Deferrimicrobiota · 2 ✖

bioproject 1

  • PRJNA498309 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26887428 26887428 PRJNA498309_P_NODE_94941_length_206_cov_4.544379_g92792_i0 PRJNA498309 94941 206 4.544379 9.36142074 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 60.5 8.51e-9   NR HZW83747.1 3060586 g92792 i0 51.7 0.844660194174757 58 27 83 1 193 23 193 250 HZW83747.1 N-acetylmuramoyl-L-alanine amidase [Candidatus Deferrimicrobium sp.] diamond 174 60.5 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.
27013709 27013709 PRJNA498309_P_NODE_84362_length_236_cov_13.326633_g82213_i0 PRJNA498309 84362 236 13.326633 31.45085388 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 41.2 0.0406   NR WP_370655921.1 3060586 g82213 i0 41.3 0.584745762711864 46 27 58.5 0 144 7 43 88 WP_370655921.1 SOS response-associated peptidase family protein [Candidatus Deferrimicrobium sp.] diamond 138 41.2 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;