RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495917 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27266673 27266673 PRJNA495917_S_NODE_6563_length_202_cov_1.197605_g6369_i0 PRJNA495917 6563 202 1.197605 2.4191621 Megalodesulfovibrio gigas 879 Bacteria Bacteria 67.4 4.27e-11   NR WP_051286656.1 879 g6369 i0 55.6 0.935643564356436 63 28 93.6 0 200 12 131 193 WP_051286656.1 FkbM family methyltransferase [Megalodesulfovibrio gigas] diamond 189 67.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Megalodesulfovibrio Megalodesulfovibrio gigas
28040156 28040156 PRJNA495917_S_NODE_8245_length_186_cov_1.589404_g8051_i0 PRJNA495917 8245 186 1.589404 2.95629144 Pseudomonadati 3379134 Bacteria Bacteria 53.5 2.68e-6   NR MBI5519820.1 885 g8051 i0 49.2 3.46774193548387 61 28 95.2 2 6 182 627 686 MBI5519820.1 DNA polymerase I [Desulfovibrio sp.] diamond 645 53.9 0.992578849721707 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;