RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495917 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30171708 30171708 PRJNA495917_S_NODE_8892_length_181_cov_7.328767_g8698_i0 PRJNA495917 8892 181 7.328767 13.26506827 Adiantum nelumboides 2759587 Plants Plants 53.9 1.73e-6   NR MCO5553831.1 2759587 g8698 i0 53.8 16.3259668508287 39 18 64.6 0 119 3 60 98 MCO5553831.1 hypothetical protein [Adiantum nelumboides] diamond 2955 53.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Polypodiopsida Polypodiales Pteridaceae Adiantum Adiantum nelumboides
31546439 31546439 PRJNA495917_S_NODE_3256_length_272_cov_2.848101_g3062_i0 PRJNA495917 3256 272 2.848101 7.74683472 Cichorium 13426 Plants Plants 43.5 0.0269   NR KAI3671793.1 13427 g3062 i0 38.6 1.54411764705882 70 40 77.2 1 42 251 301 367 KAI3671793.1 hypothetical protein L2E82_53258 [Cichorium intybus] diamond 420 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Cichorium Cichorium intybus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;